Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008954.1 Kokia drynarioides strain JFW-HI SEQ_123650, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12136
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36


Found at i:2381 original size:16 final size:17

Alignment explanation


    Indices: 2349--2381  Score: 50
    Period size: 16  Copynumber: 2.0  Consensus size: 17

       2339 CAAATTCGCT

                        *    
       2349 CAATTCAAAACAGAAAA
          1 CAATTCAAAACAAAAAA

                             
       2366 CAATTC-AAACAAAAAA
          1 CAATTCAAAACAAAAAA

       2382 TGACTTGAAC


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  16    9  0.60
  17    6  0.40

ACGTcount: A:0.67, C:0.18, G:0.03, T:0.12


Consensus pattern (17 bp):   
CAATTCAAAACAAAAAA

Found at i:7353 original size:2 final size:2

Alignment explanation


    Indices: 7314--7338  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       7304 CATGTTAATT

                                                 
       7314 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

       7339 TGTTGATTCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA
Done.