Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008956.1 Kokia drynarioides strain JFW-HI SEQ_123652, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11717
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34

Warning! 66 characters in sequence are not A, C, G, or T


Found at i:8281 original size:26 final size:26

Alignment explanation


    Indices: 8252--8305  Score: 81
    Period size: 26  Copynumber: 2.1  Consensus size: 26

       8242 ATTCTTGGCG

                      *               
       8252 CAATTCTGAATACGTTCATGCAGCGA
          1 CAATTCTGAACACGTTCATGCAGCGA

                    *   *             
       8278 CAATTCTGGACATGTTCATGCAGCGA
          1 CAATTCTGAACACGTTCATGCAGCGA

              
       8304 CA
          1 CA

       8306 CTCTTGGGTG


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26


Consensus pattern (26 bp):   
CAATTCTGAACACGTTCATGCAGCGA

Found at i:8416 original size:37 final size:37

Alignment explanation


    Indices: 8339--8409  Score: 99
    Period size: 37  Copynumber: 1.9  Consensus size: 37

       8329 TTCCTTTGGT

                                *                
       8339 GACAATTTTGGGTGCAATCTGGCAGTGCTCATGTGAC
          1 GACAATTTTGGGTGCAATCTAGCAGTGCTCATGTGAC

                *             *                
       8376 GACAGTTTTGGGTGCAATTTAG-AGGTGCTCATGT
          1 GACAATTTTGGGTGCAATCTAGCA-GTGCTCATGT

       8410 AGCGACATTA


Statistics
Matches: 30,  Mismatches: 3, Indels: 2
        0.86            0.09        0.06

Matches are distributed among these distances:
  36    1  0.03
  37   29  0.97

ACGTcount: A:0.21, C:0.15, G:0.31, T:0.32


Consensus pattern (37 bp):   
GACAATTTTGGGTGCAATCTAGCAGTGCTCATGTGAC
Done.