Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008964.1 Kokia drynarioides strain JFW-HI SEQ_123660, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2622
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37


Found at i:1098 original size:25 final size:25

Alignment explanation


    Indices: 1064--1123  Score: 111
    Period size: 25  Copynumber: 2.4  Consensus size: 25

       1054 CATTTTGTTC

                 *                   
       1064 TGAATTACCTCTTGTGTTCTTATTA
          1 TGAATAACCTCTTGTGTTCTTATTA

                                     
       1089 TGAATAACCTCTTGTGTTCTTATTA
          1 TGAATAACCTCTTGTGTTCTTATTA

                      
       1114 TGAATAACCT
          1 TGAATAACCT

       1124 AATGTATATT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  25   34  1.00

ACGTcount: A:0.25, C:0.17, G:0.12, T:0.47


Consensus pattern (25 bp):   
TGAATAACCTCTTGTGTTCTTATTA
Done.