Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01008965.1 Kokia drynarioides strain JFW-HI SEQ_123661, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12674
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Found at i:2104 original size:177 final size:177
Alignment explanation
Indices: 1808--2167 Score: 657
Period size: 177 Copynumber: 2.0 Consensus size: 177
1798 CAACATTACT
* * *
1808 TTGTTTGGTGGTTCGTTTTTGTGTTCTTTGCTACTATATCAGACAATGTTGTTTCAGTTGGTATT
1 TTGTTTGGTGGCTCCTTTTTGTGTTCTTTGCTACTATATCAGACAATGTTGTTTCAATTGGTATT
*
1873 ACATTTTAGTCATTTGCTTATATTCAACCATTGCTTTAATTTGTTGAAATAAGTGGCAGATGACA
66 ACATTTTAGTCATTTGCTTATATTCAACCATTGCTTCAATTTGTTGAAATAAGTGGCAGATGACA
1938 ACAACTAACAATCAAGCTTCAGTTGCTTGGCTGCTACAATTTTCAAC
131 ACAACTAACAATCAAGCTTCAGTTGCTTGGCTGCTACAATTTTCAAC
*
1985 TTGTTTGGTTGCTCCTTTTTGTGTTCTTTGCTACTATATCAGACAATGTTGTTTCAATTGGTATT
1 TTGTTTGGTGGCTCCTTTTTGTGTTCTTTGCTACTATATCAGACAATGTTGTTTCAATTGGTATT
2050 ACATTTTAGTCATTTGCTTATATTCAACCATTGCTTCAATTTGTTGAAATAAGTGGCAGATGACA
66 ACATTTTAGTCATTTGCTTATATTCAACCATTGCTTCAATTTGTTGAAATAAGTGGCAGATGACA
* *
2115 ATAACTAACGATCAAGCTTCAGTTGCTTGGCTGCTACAATTTTCAAC
131 ACAACTAACAATCAAGCTTCAGTTGCTTGGCTGCTACAATTTTCAAC
2162 TTGTTT
1 TTGTTT
2168 ATTTAATGTT
Statistics
Matches: 176, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
177 176 1.00
ACGTcount: A:0.24, C:0.16, G:0.17, T:0.42
Consensus pattern (177 bp):
TTGTTTGGTGGCTCCTTTTTGTGTTCTTTGCTACTATATCAGACAATGTTGTTTCAATTGGTATT
ACATTTTAGTCATTTGCTTATATTCAACCATTGCTTCAATTTGTTGAAATAAGTGGCAGATGACA
ACAACTAACAATCAAGCTTCAGTTGCTTGGCTGCTACAATTTTCAAC
Done.