Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01008969.1 Kokia drynarioides strain JFW-HI SEQ_123666, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 95005
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.33
Warning! 232 characters in sequence are not A, C, G, or T
Found at i:3312 original size:27 final size:27
Alignment explanation
Indices: 3282--3334 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
3272 GAACGGGATG
* *
3282 GGGACGGGGACGGGGATGGGATGGGAC
1 GGGACGGGAACGGGGATGGGACGGGAC
3309 GGGACGGGAACGGGGATGGGACGGGA
1 GGGACGGGAACGGGGATGGGACGGGA
3335 ATGGAACGGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.11, G:0.62, T:0.06
Consensus pattern (27 bp):
GGGACGGGAACGGGGATGGGACGGGAC
Found at i:3334 original size:22 final size:22
Alignment explanation
Indices: 3271--3343 Score: 78
Period size: 22 Copynumber: 3.3 Consensus size: 22
3261 GCAATGGAAA
3271 GGAAC-GGGATGGGGACGGGGACG
1 GGAACGGGGAT-GGGAC-GGGACG
* *
3294 GGGA-TGGGATGGGACGGGACG
1 GGAACGGGGATGGGACGGGACG
**
3315 GGAACGGGGATGGGACGGGAAT
1 GGAACGGGGATGGGACGGGACG
3337 GGAACGG
1 GGAACGG
3344 AACGAAAAGG
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
21 9 0.21
22 26 0.60
23 8 0.19
ACGTcount: A:0.23, C:0.11, G:0.59, T:0.07
Consensus pattern (22 bp):
GGAACGGGGATGGGACGGGACG
Found at i:3345 original size:27 final size:27
Alignment explanation
Indices: 3285--3347 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
3275 CGGGATGGGG
* * *
3285 ACGGGGACGGGGATGGGATGGGACGGG
1 ACGGGAACGGGGATGGGACGGGACGGA
*
3312 ACGGGAACGGGGATGGGACGGGAATGGA
1 ACGGGAACGGGGATGGGACGGG-ACGGA
3340 AC-GGAACG
1 ACGGGAACG
3348 AAAAGGAAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.25, C:0.13, G:0.56, T:0.06
Consensus pattern (27 bp):
ACGGGAACGGGGATGGGACGGGACGGA
Found at i:13743 original size:16 final size:16
Alignment explanation
Indices: 13722--13759 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
13712 TAATACTATA
*
13722 TATTTTATTTATTTA-T
1 TATTTTA-TAATTTATT
13738 TATTTTATAATTTATT
1 TATTTTATAATTTATT
13754 TATTTT
1 TATTTT
13760 TGGACCTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TATTTTATAATTTATT
Found at i:25134 original size:31 final size:29
Alignment explanation
Indices: 25099--25163 Score: 69
Period size: 30 Copynumber: 2.1 Consensus size: 29
25089 ATAAAAATTT
25099 AAATTACATTTTAAT-TTTCTAAAAAAAATAA
1 AAATTA-A-TTTAATCTTT-TAAAAAAAATAA
**
25130 AAATTTAATTTAATCTTTTAAAAATTATAA
1 AAA-TTAATTTAATCTTTTAAAAAAAATAA
25160 AAAT
1 AAAT
25164 ATAAAAAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
29 1 0.03
30 19 0.63
31 7 0.23
32 3 0.10
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.42
Consensus pattern (29 bp):
AAATTAATTTAATCTTTTAAAAAAAATAA
Found at i:34540 original size:16 final size:16
Alignment explanation
Indices: 34515--34545 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34505 CAAATCCAAA
34515 TCCAAACCCAGAAAAC
1 TCCAAACCCAGAAAAC
*
34531 TCCAACCCCAGAAAA
1 TCCAAACCCAGAAAA
34546 GATATAACCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.39, G:0.06, T:0.06
Consensus pattern (16 bp):
TCCAAACCCAGAAAAC
Found at i:46570 original size:23 final size:24
Alignment explanation
Indices: 46517--46570 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 24
46507 ATTAAGAGTC
* *
46517 AAAATT-AAATTATAATTTTTATT
1 AAAATTAAAAATATAATTTTTATA
*
46540 ATAA-TAAAAATATAATTTTT-TA
1 AAAATTAAAAATATAATTTTTATA
46562 AAAATTAAA
1 AAAATTAAA
46571 TCGAAATTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 5 0.20
23 20 0.80
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
AAAATTAAAAATATAATTTTTATA
Found at i:46620 original size:29 final size:28
Alignment explanation
Indices: 46555--46620 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
46545 AAAAATATAA
46555 TTTTTTAAAAATTAAATCGAAATTTTATC
1 TTTTTTAAAAATTAAATC-AAATTTTATC
*
46584 ATTTTTAAAAATTAAAGT-ACAATTTTAT-
1 TTTTTTAAAAATTAAA-TCA-AATTTTATC
46612 TTTTATTAA
1 TTTT-TTAA
46621 TTTAAAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 4 0.12
29 27 0.84
30 1 0.03
ACGTcount: A:0.42, C:0.05, G:0.03, T:0.50
Consensus pattern (28 bp):
TTTTTTAAAAATTAAATCAAATTTTATC
Found at i:46867 original size:23 final size:23
Alignment explanation
Indices: 46841--46886 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
46831 ATCACTTAGT
46841 TATCATACAATCATCTCAACTTG
1 TATCATACAATCATCTCAACTTG
*
46864 TATCATACAATCATCTCCACTTG
1 TATCATACAATCATCTCAACTTG
46887 AATCCCGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.28, G:0.04, T:0.35
Consensus pattern (23 bp):
TATCATACAATCATCTCAACTTG
Found at i:50260 original size:3 final size:3
Alignment explanation
Indices: 50252--50291 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
50242 AAATGGAGTA
50252 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
50292 CAAGCTTCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:53468 original size:24 final size:24
Alignment explanation
Indices: 53423--53468 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
53413 GTTTAAATAA
* *
53423 ATTTGAATTTTACAAATTATAAAT
1 ATTTCAATTTTACAAATAATAAAT
53447 ATTTCAATTTTA-AATATAATAA
1 ATTTCAATTTTACAA-ATAATAA
53469 TTCATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.11
24 17 0.89
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (24 bp):
ATTTCAATTTTACAAATAATAAAT
Found at i:53967 original size:15 final size:15
Alignment explanation
Indices: 53949--53979 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
53939 TAAGATTAGT
53949 TTTTATTTAAAAATA
1 TTTTATTTAAAAATA
*
53964 TTTTTTTTAAAAATA
1 TTTTATTTAAAAATA
53979 T
1 T
53980 AACACACTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTTATTTAAAAATA
Found at i:54325 original size:19 final size:20
Alignment explanation
Indices: 54285--54346 Score: 74
Period size: 20 Copynumber: 3.1 Consensus size: 20
54275 ACAAAAAAAT
*
54285 AATAATTTTCAAAATATTAA
1 AATAATTTTTAAAATATTAA
54305 AATAATTTTTAAAAT-TTAA
1 AATAATTTTTAAAATATTAA
* *
54324 AAT-ATTTATAAAAAATTCAA
1 AATAATTTTTAAAATATT-AA
54344 AAT
1 AAT
54347 TTATATTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
18 9 0.24
19 9 0.24
20 19 0.51
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.40
Consensus pattern (20 bp):
AATAATTTTTAAAATATTAA
Found at i:58786 original size:68 final size:68
Alignment explanation
Indices: 58677--58941 Score: 343
Period size: 68 Copynumber: 3.9 Consensus size: 68
58667 TCATATCTGG
* * * * *
58677 TGCCATAGCCGAACTATGGTTTTACAAAGTATGAACCCATGTTTAATGTCCTGGCGGACTCTATA
1 TGCCATAGCCTAGCTATGGTCTTACACAGTATGAACCCATGTTTAATGTCCTGGCGGACTCCATA
58742 TGT
66 TGT
*
58745 TGCCATAGCCTA-CGTATGGTATTACACAGTATGAACCCATGTTTAATGTCCTGGCGGACTCCAT
1 TGCCATAGCCTAGC-TATGGTCTTACACAGTATGAACCCATGTTTAATGTCCTGGCGGACTCCAT
58809 ATGT
65 ATGT
* * * * * * * *
58813 TGTCATAGCTTAGCTATGGTCTTACATATTATAAACTCATGTTTAATGTCCTAGCAGACTCCATA
1 TGCCATAGCCTAGCTATGGTCTTACACAGTATGAACCCATGTTTAATGTCCTGGCGGACTCCATA
58878 TGT
66 TGT
* * * * *
58881 CGCCATAGCCTAGTTATGATCTTACACATTATGAAACCATGTTTAATGTCCTGGCGGACTC
1 TGCCATAGCCTAGCTATGGTCTTACACAGTATGAACCCATGTTTAATGTCCTGGCGGACTC
58942 TTGATTCCAA
Statistics
Matches: 171, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
67 1 0.01
68 169 0.99
69 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.33
Consensus pattern (68 bp):
TGCCATAGCCTAGCTATGGTCTTACACAGTATGAACCCATGTTTAATGTCCTGGCGGACTCCATA
TGT
Found at i:60621 original size:157 final size:158
Alignment explanation
Indices: 60303--60619 Score: 575
Period size: 157 Copynumber: 2.0 Consensus size: 158
60293 CACCTCAATC
60303 TTTAAAAAAAAATCAAATTCAACCATCAATTTTTAAAAAAGAATTGAATTGTTATTTTTATAATA
1 TTTAAAAAAAAATCAAATTCAACCATCAATTTTTAAAAAAGAATTGAATTGTTATTTTTATAATA
* * *
60368 AAAATACTAACTAGAACGCATTACTTTTTATACATGGCAACTCACATGATAATTCACAGATATTT
66 AAAATAATAACTAAAACGCAATACTTTTTATACATGGCAACTCACATGATAATTCACAGATATTT
*
60433 CATATTTTTTTTTGAGTTTTTATGAACT
131 CATATTTTTTTTTGAGTTTTTAAGAACT
*
60461 TTTAAAAAAAAATCAAATTCAACCATCAATTTTTAAAAAAGAATTGAATTGTTGTTTTTATAAT-
1 TTTAAAAAAAAATCAAATTCAACCATCAATTTTTAAAAAAGAATTGAATTGTTATTTTTATAATA
60525 AAAATAATAACTAAAACGCAATACTTTTTATACATGGCAACTCACATGATAATTCACAGATATTT
66 AAAATAATAACTAAAACGCAATACTTTTTATACATGGCAACTCACATGATAATTCACAGATATTT
60590 CATA-TTTTTTTTGAGTTTTTAAGAACT
131 CATATTTTTTTTTGAGTTTTTAAGAACT
60617 TTT
1 TTT
60620 TATTTTTTAT
Statistics
Matches: 154, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
156 25 0.16
157 66 0.43
158 63 0.41
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.40
Consensus pattern (158 bp):
TTTAAAAAAAAATCAAATTCAACCATCAATTTTTAAAAAAGAATTGAATTGTTATTTTTATAATA
AAAATAATAACTAAAACGCAATACTTTTTATACATGGCAACTCACATGATAATTCACAGATATTT
CATATTTTTTTTTGAGTTTTTAAGAACT
Found at i:62853 original size:17 final size:18
Alignment explanation
Indices: 62831--62871 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
62821 AAATAAATTT
62831 TTAATTAAATAA-TTT-AA
1 TTAATTAAA-AATTTTAAA
62848 TTAATTAAAAATTTTAAA
1 TTAATTAAAAATTTTAAA
62866 TTAATT
1 TTAATT
62872 GAACTGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.09
17 12 0.55
18 8 0.36
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAATTAAAAATTTTAAA
Found at i:62864 original size:13 final size:15
Alignment explanation
Indices: 62821--62869 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
62811 GCTGGAAAGA
62821 AAATAAATTTTTAATT
1 AAAT-AATTTTTAATT
62837 AAATAATTTAATTAATT
1 AAATAATTT--TTAATT
*
62854 AAA-AATTTTAAATT
1 AAATAATTTTTAATT
62868 AA
1 AA
62870 TTGAACTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 7 0.23
15 5 0.17
16 9 0.30
17 9 0.30
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATAATTTTTAATT
Found at i:64988 original size:13 final size:13
Alignment explanation
Indices: 64970--64994 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64960 ATTACACGAC
64970 ACACCGTCTTATA
1 ACACCGTCTTATA
64983 ACACCGTCTTAT
1 ACACCGTCTTAT
64995 CCTTTTTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.32
Consensus pattern (13 bp):
ACACCGTCTTATA
Found at i:76891 original size:40 final size:40
Alignment explanation
Indices: 76836--76916 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
76826 ATTGCTGCCT
76836 TCATCCAAGTTACTTCTCTAAGTCTATGATATTCATTCCA
1 TCATCCAAGTTACTTCTCTAAGTCTATGATATTCATTCCA
76876 TCATCCAAGTTACTTCTCTAAGTCTATGATATTCATTCCA
1 TCATCCAAGTTACTTCTCTAAGTCTATGATATTCATTCCA
76916 T
1 T
76917 AAAAATTGCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.27, C:0.25, G:0.07, T:0.41
Consensus pattern (40 bp):
TCATCCAAGTTACTTCTCTAAGTCTATGATATTCATTCCA
Found at i:83097 original size:8 final size:8
Alignment explanation
Indices: 83084--83110 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
83074 TAAAAATTTG
83084 AAATAATA
1 AAATAATA
83092 AAATAATA
1 AAATAATA
83100 AAATAATA
1 AAATAATA
83108 AAA
1 AAA
83111 GTTGATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (8 bp):
AAATAATA
Found at i:84635 original size:10 final size:10
Alignment explanation
Indices: 84600--84638 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
84590 TCAGATTATA
*
84600 ATATTTATTT
1 ATATTTAATT
*
84610 ATAATTAATT
1 ATATTTAATT
84620 ATTATTTAATT
1 A-TATTTAATT
84631 ATATTTAA
1 ATATTTAA
84639 ATAAAATTTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
ATATTTAATT
Found at i:86478 original size:52 final size:52
Alignment explanation
Indices: 86400--86506 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
86390 TAGACTCGAC
*
86400 TTAGGATTCAGTCCATTTACTTCAAGTTGAATATTTATTCTTCCTACTTTTA
1 TTAGGATTCAGTCCATTTACTTCAAGTTGAATATTTATTCTTCCTACTATTA
*
86452 TTAGGATTCAGTCCATTTACTTCAAGTTGAATATTTATTCTTCTTACTATTA
1 TTAGGATTCAGTCCATTTACTTCAAGTTGAATATTTATTCTTCCTACTATTA
86504 TTA
1 TTA
86507 TGTTATGTGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.26, C:0.16, G:0.09, T:0.49
Consensus pattern (52 bp):
TTAGGATTCAGTCCATTTACTTCAAGTTGAATATTTATTCTTCCTACTATTA
Found at i:88527 original size:24 final size:24
Alignment explanation
Indices: 88499--88559 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
88489 AGAAATAATC
*
88499 TTTCAGTTAAACTCTGTTTATTTG
1 TTTCAGTTAAACTCTATTTATTTG
*
88523 TTTCAATTAAACTCTATTTATTTG
1 TTTCAGTTAAACTCTATTTATTTG
* *
88547 TTTGAGTCAAACT
1 TTTCAGTTAAACT
88560 TTTATTAGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.26, C:0.13, G:0.10, T:0.51
Consensus pattern (24 bp):
TTTCAGTTAAACTCTATTTATTTG
Found at i:88725 original size:24 final size:23
Alignment explanation
Indices: 88692--88736 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
88682 TAGTGCTTAC
* *
88692 GTTTTGAGGGTTTTTTGTTTTAGG
1 GTTTTCAGGGTTTATT-TTTTAGG
88716 GTTTTCAGGGTTTATTTTTTA
1 GTTTTCAGGGTTTATTTTTTA
88737 TCTCCATCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.11, C:0.02, G:0.27, T:0.60
Consensus pattern (23 bp):
GTTTTCAGGGTTTATTTTTTAGG
Found at i:92278 original size:22 final size:22
Alignment explanation
Indices: 92245--92289 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 22
92235 AAATTTATGA
92245 AAATGTTAGAATGGAA-GTTTAG
1 AAATGTTAGAAT-GAATGTTTAG
92267 AAATAGTT-GAATGAATGTTTAG
1 AAAT-GTTAGAATGAATGTTTAG
92289 A
1 A
92290 CATGCTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 3 0.14
22 15 0.71
23 3 0.14
ACGTcount: A:0.42, C:0.00, G:0.24, T:0.33
Consensus pattern (22 bp):
AAATGTTAGAATGAATGTTTAG
Found at i:93178 original size:123 final size:123
Alignment explanation
Indices: 92959--93214 Score: 512
Period size: 123 Copynumber: 2.1 Consensus size: 123
92949 AGGGCTGTCC
92959 ATTTCCACGATAACATGTTGCAAGTCAAGTGATCTCAAGAGCCGAAAGTTCGTCCATGGCACCCT
1 ATTTCCACGATAACATGTTGCAAGTCAAGTGATCTCAAGAGCCGAAAGTTCGTCCATGGCACCCT
93024 AAAGATCAGCATCCAATACAGAAGAATGATCGACTATACGAGCAAAGCCTGCCATCCA
66 AAAGATCAGCATCCAATACAGAAGAATGATCGACTATACGAGCAAAGCCTGCCATCCA
93082 ATTTCCACGATAACATGTTGCAAGTCAAGTGATCTCAAGAGCCGAAAGTTCGTCCATGGCACCCT
1 ATTTCCACGATAACATGTTGCAAGTCAAGTGATCTCAAGAGCCGAAAGTTCGTCCATGGCACCCT
93147 AAAGATCAGCATCCAATACAGAAGAATGATCGACTATACGAGCAAAGCCTGCCATCCA
66 AAAGATCAGCATCCAATACAGAAGAATGATCGACTATACGAGCAAAGCCTGCCATCCA
93205 ATTTCCACGA
1 ATTTCCACGA
93215 GCATCTCTAA
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
123 133 1.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (123 bp):
ATTTCCACGATAACATGTTGCAAGTCAAGTGATCTCAAGAGCCGAAAGTTCGTCCATGGCACCCT
AAAGATCAGCATCCAATACAGAAGAATGATCGACTATACGAGCAAAGCCTGCCATCCA
Done.