Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000897.1 Kokia drynarioides strain JFW-HI SEQ_112024, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4489
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:2436 original size:26 final size:26

Alignment explanation


    Indices: 2384--2436  Score: 70
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       2374 TTAAATTTTT

                    *        *    *   
       2384 TTCGAATCGAGTCAAATGAAATGAAA
          1 TTCGAATCAAGTCAAATCAAATAAAA

                                *     
       2410 TTCGAATCAAGTCAAATCAAGTAAAA
          1 TTCGAATCAAGTCAAATCAAATAAAA

             
       2436 T
          1 T

       2437 AAAAAAAAAA


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  26   23  1.00

ACGTcount: A:0.47, C:0.13, G:0.15, T:0.25


Consensus pattern (26 bp):   
TTCGAATCAAGTCAAATCAAATAAAA

Found at i:3314 original size:16 final size:16

Alignment explanation


    Indices: 3293--3327  Score: 54
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       3283 TTTTAATCCT

                             
       3293 TTAAATTTAA-AAAAAA
          1 TTAAA-TTAATAAAAAA

                            
       3309 TTAAATTAATAAAAAA
          1 TTAAATTAATAAAAAA

               
       3325 TTA
          1 TTA

       3328 TACTTTAACC


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    4  0.22
  16   14  0.78

ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34


Consensus pattern (16 bp):   
TTAAATTAATAAAAAA
Done.