Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008971.1 Kokia drynarioides strain JFW-HI SEQ_123668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 718

Length: 1198
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.33


Found at i:220 original size:36 final size:36

Alignment explanation


    Indices: 173--254  Score: 92
    Period size: 36  Copynumber: 2.3  Consensus size: 36

        163 AGCAGGTATT

                  *         *      *   * *      
        173 ATATCAAGGTACTCCGTGAACTCGGCTGCTTGTGCC
          1 ATATCAGGGTACTCCGCGAACTCAGCTACATGTGCC

                          *                   * 
        209 ATATCAGGGTACTCTGCGAACTCAGCTACATGTGTC
          1 ATATCAGGGTACTCCGCGAACTCAGCTACATGTGCC

            *         
        245 GTATCAGGGT
          1 ATATCAGGGT

        255 CTATAAGTGA


Statistics
Matches: 38,  Mismatches: 8, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  36   38  1.00

ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28


Consensus pattern (36 bp):   
ATATCAGGGTACTCCGCGAACTCAGCTACATGTGCC

Found at i:1115 original size:27 final size:26

Alignment explanation


    Indices: 1080--1130  Score: 66
    Period size: 27  Copynumber: 1.9  Consensus size: 26

       1070 AAATAAGCAC

                *      *  *            
       1080 TGGTGCCGCCTCTCTATATGGCACCAT
          1 TGGTACCGCCTATCGATA-GGCACCAT

                                    
       1107 TGGTACCGCCTATCGATAGGCACC
          1 TGGTACCGCCTATCGATAGGCACC

       1131 TCTCGATATT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  26    6  0.29
  27   15  0.71

ACGTcount: A:0.18, C:0.33, G:0.24, T:0.25


Consensus pattern (26 bp):   
TGGTACCGCCTATCGATAGGCACCAT
Done.