Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008972.1 Kokia drynarioides strain JFW-HI SEQ_123669, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1760
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27


Found at i:269 original size:36 final size:36

Alignment explanation


    Indices: 205--286  Score: 103
    Period size: 36  Copynumber: 2.3  Consensus size: 36

        195 TCACTTATAG

                            * *                 
        205 ACCCTGATATGACACATGTAGCTGAGTTCACAGAGT
          1 ACCCTGATATGACACAAGCAGCTGAGTTCACAGAGT

                       *                    *    
        241 ACCCTGATATGGCACAAGCAGCCT-AGTTCACGGAGT
          1 ACCCTGATATGACACAAGCAG-CTGAGTTCACAGAGT

               *      
        277 ACCTTGATAT
          1 ACCCTGATAT

        287 AATACCTGCT


Statistics
Matches: 40,  Mismatches: 5, Indels: 2
        0.85            0.11        0.04

Matches are distributed among these distances:
  36   38  0.95
  37    2  0.05

ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24


Consensus pattern (36 bp):   
ACCCTGATATGACACAAGCAGCTGAGTTCACAGAGT
Done.