Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008973.1 Kokia drynarioides strain JFW-HI SEQ_123670, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2335
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:268 original size:36 final size:36

Alignment explanation


    Indices: 205--286  Score: 92
    Period size: 36  Copynumber: 2.3  Consensus size: 36

        195 TCACTTATAG

                     *      * *   *      *      
        205 ACCCTGATACGACACATGTAGCTGAGTTCGCAGAGT
          1 ACCCTGATATGACACAAGCAGCCGAGTTCACAGAGT

                       *                   *    
        241 ACCCTGATATGGCACAAGCAGCCGAGTTCACGGAGT
          1 ACCCTGATATGACACAAGCAGCCGAGTTCACAGAGT

               *      
        277 ACCTTGATAT
          1 ACCCTGATAT

        287 AATACCTGCT


Statistics
Matches: 38,  Mismatches: 8, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  36   38  1.00

ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22


Consensus pattern (36 bp):   
ACCCTGATATGACACAAGCAGCCGAGTTCACAGAGT
Done.