genome.fa.s8975.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01008975.1 Kokia drynarioides strain JFW-HI SEQ_123672, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  136794

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369--405	15	2.5	15	95	0	65	8	16	13	62	1.54
369--410	10	4.2	10	81	6	50	9	16	11	61	1.55
369--411	15	2.9	15	86	6	61	11	16	11	60	1.59
2640--2684	23	2.0	23	95	0	81	22	11	22	44	1.84
3229--3290	29	2.1	29	100	0	124	51	9	14	24	1.72
6168--6242	37	2.0	37	100	0	150	26	16	2	54	1.55
10018--10071	28	2.0	27	88	3	81	46	1	0	51	1.11
13391--13681	26	11.3	26	82	2	311	32	15	24	28	1.95
13391--13681	51	5.7	52	81	2	311	32	15	24	28	1.95
13403--13681	128	2.2	128	90	0	450	31	15	24	28	1.95
18795--18951	78	2.0	78	85	3	208	48	17	19	15	1.81
19717--20005	101	2.9	100	78	3	314	36	17	17	28	1.93
20627--20666	13	3.1	13	82	13	55	47	42	0	10	1.37
21254--21297	23	1.9	23	90	9	72	22	2	0	75	0.92
21254--21300	5	9.8	5	78	17	55	21	2	0	76	0.89
21461--21499	19	2.2	18	90	9	62	20	10	5	64	1.44
21558--21610	4	13.2	4	84	7	72	26	0	1	71	0.96
21561--21610	21	2.5	20	90	6	75	26	0	2	72	0.96
21558--21605	25	1.9	25	91	0	78	27	0	2	70	0.98
28286--28332	21	2.2	21	84	0	58	61	10	27	0	1.29
41539--41620	21	4.3	20	68	25	61	48	14	6	30	1.68
41552--41631	18	4.4	18	69	20	67	53	15	6	25	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41539--41687	55	2.7	55	90	1	228	49	15	8	26	1.72
42040--42086	23	2.0	23	100	0	94	25	25	17	31	1.97
46758--46854	40	2.4	40	74	6	106	32	18	15	32	1.92
53278--53319	21	2.0	21	86	9	59	45	23	11	19	1.83
61235--61363	56	2.3	56	84	0	177	31	29	15	24	1.95
63816--63859	13	3.4	13	74	0	52	34	9	9	47	1.67
68123--68164	8	5.2	8	97	0	75	23	11	35	28	1.91
68648--68677	15	2.0	15	100	0	60	40	20	6	33	1.78
68932--69064	47	2.9	47	82	5	137	20	3	18	57	1.55
68973--69048	22	3.2	24	70	23	72	19	3	14	61	1.48
69114--69140	14	1.9	14	100	0	54	25	7	14	51	1.68
69477--69528	3	17.3	3	100	0	104	32	0	0	67	0.91
76962--77068	56	1.9	56	96	0	196	38	10	23	28	1.87
79727--79804	33	2.4	33	95	2	140	23	21	10	44	1.82
88832--88867	15	2.4	15	95	0	63	13	27	5	52	1.63
89332--89465	66	2.0	67	97	1	252	42	5	12	38	1.68
90488--90547	22	2.7	21	76	21	59	18	8	0	73	1.08
90501--90547	21	2.2	21	88	3	67	19	8	0	72	1.10
98074--98105	3	10.3	3	93	6	55	65	3	0	31	1.08
98381--98415	15	2.4	15	90	4	54	60	5	2	31	1.35
98473--98585	37	3.1	36	68	20	92	41	1	2	53	1.25
98953--99014	5	12.2	5	76	10	63	54	3	3	38	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102791--102866	37	2.1	37	97	0	143	39	3	0	56	1.18
105050--105223	96	1.8	96	82	9	230	35	14	21	27	1.93
105429--105491	30	2.1	30	85	5	83	33	11	26	28	1.91
105429--105503	29	2.6	29	85	6	89	32	10	26	30	1.90
105547--105686	59	2.4	59	82	10	144	37	5	25	32	1.79
105574--105678	29	3.6	29	74	13	99	36	5	25	32	1.80
105605--106065	30	15.8	29	71	12	187	32	3	28	35	1.73
105578--105911	59	5.8	56	78	15	247	32	3	27	35	1.73
105756--105929	59	2.9	59	90	0	258	30	2	29	37	1.70
105756--105963	59	3.5	58	85	5	204	31	2	29	37	1.70
105937--106068	58	2.3	59	85	7	180	29	4	31	34	1.78
107161--107209	19	2.5	20	80	12	66	38	2	0	59	1.09
107165--107218	17	3.1	17	78	5	54	42	1	0	55	1.10
107984--108112	17	7.4	17	83	4	159	53	3	1	41	1.26
107984--108079	6	16.7	6	69	12	67	53	2	2	42	1.24
107984--108112	52	2.5	52	85	3	161	53	3	1	41	1.26
110860--110895	6	6.0	6	96	0	63	16	0	52	30	1.44
116581--116688	51	2.1	54	91	5	177	49	5	7	37	1.54
119372--119434	30	2.2	27	83	11	72	44	17	9	28	1.80
128555--128629	32	2.5	30	82	6	89	30	0	1	68	0.98
131666--131758	30	3.1	30	73	4	82	39	26	2	31	1.68
134121--134662	50	11.0	49	69	9	231	35	15	28	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134073--134662	99	6.0	99	85	0	649	34	16	28	20	1.94
136344--136401	30	1.9	30	85	0	80	32	29	6	31	1.84
136383--136606	29	7.6	30	71	9	142	32	20	5	41	1.75
136353--136607	30	8.7	30	70	8	139	32	22	5	39	1.76

Tables:   1

The End!