Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008989.1 Kokia drynarioides strain JFW-HI SEQ_123687, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7502
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.33


Found at i:1086 original size:31 final size:31

Alignment explanation


    Indices: 1051--1129  Score: 81
    Period size: 31  Copynumber: 2.6  Consensus size: 31

       1041 TTAAATTTCA

                                        *  
       1051 AAAAAATATAAAAATTAAAATTAACTAATTT
          1 AAAAAATATAAAAATTAAAATTAACTAAATT

                   **  *  *         *      
       1082 AAAAAATGCAATAACTAAAATTAATTAAATT
          1 AAAAAATATAAAAATTAAAATTAACTAAATT

                      *        
       1113 --AAAATATAGAAATTAAA
          1 AAAAAATATAAAAATTAAA

       1130 TCTATAATTT


Statistics
Matches: 37,  Mismatches: 11, Indels: 2
        0.74            0.22        0.04

Matches are distributed among these distances:
  29   12  0.32
  31   25  0.68

ACGTcount: A:0.65, C:0.04, G:0.03, T:0.29


Consensus pattern (31 bp):   
AAAAAATATAAAAATTAAAATTAACTAAATT

Found at i:7194 original size:39 final size:39

Alignment explanation


    Indices: 7149--7231  Score: 112
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       7139 TTGGTATTCG

                                *     **           
       7149 AATTTTAAAATTTTAGTCTCTACCAAGTGGTAACTATTA
          1 AATTTTAAAATTTTAGTCTCCACCAAACGGTAACTATTA

                          *       **               
       7188 AATTTTAAAATTTTGGTCTCCATTAAACGGTAACTATTA
          1 AATTTTAAAATTTTAGTCTCCACCAAACGGTAACTATTA

                 
       7227 AATTT
          1 AATTT

       7232 ACTGAGTTAA


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42


Consensus pattern (39 bp):   
AATTTTAAAATTTTAGTCTCCACCAAACGGTAACTATTA
Done.