Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008990.1 Kokia drynarioides strain JFW-HI SEQ_123688, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8319
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37


Found at i:1152 original size:17 final size:18

Alignment explanation


    Indices: 1130--1165  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       1120 TCTCACTTTA

                              
       1130 TCTATGT-TTTGAAATTT
          1 TCTATGTATTTGAAATTT

                       *      
       1147 TCTATGTATTTTAAATTT
          1 TCTATGTATTTGAAATTT

             
       1165 T
          1 T

       1166 TGATAATTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    7  0.41
  18   10  0.59

ACGTcount: A:0.25, C:0.06, G:0.08, T:0.61


Consensus pattern (18 bp):   
TCTATGTATTTGAAATTT

Done.