Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01008997.1 Kokia drynarioides strain JFW-HI SEQ_123695, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2746
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35


Found at i:2522 original size:85 final size:85

Alignment explanation


    Indices: 2375--2544  Score: 286
    Period size: 85  Copynumber: 2.0  Consensus size: 85

       2365 AAATAAAAAA

                              *            *   *                     *       
       2375 AGGTGTCGTTGGATGCTTGTCTTTGTTTCTATATATAAGTCTACTTGAAAATACAACTTTTTTCT
          1 AGGTGTCGTTGGATGCTTCTCTTTGTTTCTACATACAAGTCTACTTGAAAATACAACATTTTTCT

                                
       2440 GAAATTATCTCTCTTTTGCT
         66 GAAATTATCTCTCTTTTGCT

                  *                                 *                        
       2460 AGGTGTGGTTGGATGCTTCTCTTTGTTTCTACATACAAGTTTACTTGAAAATACAACATTTTTCT
          1 AGGTGTCGTTGGATGCTTCTCTTTGTTTCTACATACAAGTCTACTTGAAAATACAACATTTTTCT

                                
       2525 GAAATTATCTCTCTTTTGCT
         66 GAAATTATCTCTCTTTTGCT

       2545 GCACATTCAA


Statistics
Matches: 79,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  85   79  1.00

ACGTcount: A:0.23, C:0.16, G:0.15, T:0.46


Consensus pattern (85 bp):   
AGGTGTCGTTGGATGCTTCTCTTTGTTTCTACATACAAGTCTACTTGAAAATACAACATTTTTCT
GAAATTATCTCTCTTTTGCT
Done.