Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009004.1 Kokia drynarioides strain JFW-HI SEQ_123702, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2169
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37


Found at i:1480 original size:54 final size:53

Alignment explanation


    Indices: 1367--1482  Score: 144
    Period size: 53  Copynumber: 2.2  Consensus size: 53

       1357 TTTCTCAAAA

                                                                 
       1367 TTAAAAAAATTTGGGGTGTTGAGAAACTGATGGTCGACACCCCTTTTATCAGT
          1 TTAAAAAAATTTGGGGTGTTGAGAAACTGATGGTCGACACCCCTTTTATCAGT

             *      *   *        *  *            *  *              
       1420 TCAAAAAATTTTTGGGTGTTGGGATA-TCGATGGTCGGCATCCCTTTTATCAGTT
          1 TTAAAAAAATTTGGGGTGTTGAGAAACT-GATGGTCGACACCCCTTTTATCAG-T

                     
       1474 TTAAAAAAA
          1 TTAAAAAAA

       1483 AACTTTTTGG


Statistics
Matches: 52,  Mismatches: 9, Indels: 3
        0.81            0.14        0.05

Matches are distributed among these distances:
  52    1  0.02
  53   43  0.83
  54    8  0.15

ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34


Consensus pattern (53 bp):   
TTAAAAAAATTTGGGGTGTTGAGAAACTGATGGTCGACACCCCTTTTATCAGT
Done.