Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009005.1 Kokia drynarioides strain JFW-HI SEQ_123703, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3857
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36


Found at i:557 original size:63 final size:63

Alignment explanation


    Indices: 458--583  Score: 243
    Period size: 63  Copynumber: 2.0  Consensus size: 63

        448 AGGTTTTCAA

                                                                   *       
        458 CTCAAATCTCCTTATGTTTCAAAGTGCCCTTTACGGGTTTTCACCTCGACCTCGACCTCTCCT
          1 CTCAAATCTCCTTATGTTTCAAAGTGCCCTTTACGGGTTTTCACCTCGACCTCGAACTCTCCT

                                                                           
        521 CTCAAATCTCCTTATGTTTCAAAGTGCCCTTTACGGGTTTTCACCTCGACCTCGAACTCTCCT
          1 CTCAAATCTCCTTATGTTTCAAAGTGCCCTTTACGGGTTTTCACCTCGACCTCGAACTCTCCT

        584 TTTTCTTTTT


Statistics
Matches: 62,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  63   62  1.00

ACGTcount: A:0.18, C:0.34, G:0.13, T:0.35


Consensus pattern (63 bp):   
CTCAAATCTCCTTATGTTTCAAAGTGCCCTTTACGGGTTTTCACCTCGACCTCGAACTCTCCT
Done.