Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009011.1 Kokia drynarioides strain JFW-HI SEQ_123709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1840
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.32


Found at i:46 original size:24 final size:23

Alignment explanation


    Indices: 13--62  Score: 64
    Period size: 24  Copynumber: 2.1  Consensus size: 23

          3 TTAATATATG

                      *          * 
         13 AAATATTAATTTTAAATATTTTT
          1 AAATATTAATATTAAATATTTAT

                            *       
         36 AAATAATTAATATTAATTATTTAT
          1 AAAT-ATTAATATTAAATATTTAT

               
         60 AAA
          1 AAA

         63 ATCTAATTAG


Statistics
Matches: 23,  Mismatches: 3, Indels: 1
        0.85            0.11        0.04

Matches are distributed among these distances:
  23    4  0.17
  24   19  0.83

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (23 bp):   
AAATATTAATATTAAATATTTAT
Done.