Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009017.1 Kokia drynarioides strain JFW-HI SEQ_123715, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5281
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.36


Found at i:2903 original size:2 final size:2

Alignment explanation


    Indices: 2896--2921  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

       2886 ACGACATTAG

                                                  
       2896 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

       2922 TAAGAATCGA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:3155 original size:62 final size:62

Alignment explanation


    Indices: 3071--3197  Score: 200
    Period size: 62  Copynumber: 2.0  Consensus size: 62

       3061 TTTTTAATAG

                                        *         *                       
       3071 AATAAAAATATAAGTTCACATATTAAAAGAAACATTACTTTCATTTTTCTAATTTTACTGTA
          1 AATAAAAATATAAGTTCACATATTAAAAAAAACATTACCTTCATTTTTCTAATTTTACTGTA

                         *                   *  *           *             
       3133 AATAAAAATATAATTTCACATATTAAAAAAAACCTTGCCTTCATTTTTTTAATTTTACTGTA
          1 AATAAAAATATAAGTTCACATATTAAAAAAAACATTACCTTCATTTTTCTAATTTTACTGTA

               
       3195 AAT
          1 AAT

       3198 CAAGGTAAAT


Statistics
Matches: 59,  Mismatches: 6, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  62   59  1.00

ACGTcount: A:0.43, C:0.12, G:0.04, T:0.41


Consensus pattern (62 bp):   
AATAAAAATATAAGTTCACATATTAAAAAAAACATTACCTTCATTTTTCTAATTTTACTGTA
Done.