Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009020.1 Kokia drynarioides strain JFW-HI SEQ_123718, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4359
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:1110 original size:15 final size:15

Alignment explanation


    Indices: 1090--1120  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       1080 AAGTATTAGT

                           
       1090 ATATTTAAATTTTAA
          1 ATATTTAAATTTTAA

                    *      
       1105 ATATTTAATTTTTAA
          1 ATATTTAAATTTTAA

             
       1120 A
          1 A

       1121 AGTTATAAAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55


Consensus pattern (15 bp):   
ATATTTAAATTTTAA

Found at i:1740 original size:2 final size:2

Alignment explanation


    Indices: 1733--1757  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       1723 TCATCCTAAT

                                                 
       1733 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T

       1758 TAAAAGTGTA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.