Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009022.1 Kokia drynarioides strain JFW-HI SEQ_123720, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2993
ACGTcount: A:0.32, C:0.14, G:0.17, T:0.37


Found at i:546 original size:15 final size:15

Alignment explanation


    Indices: 526--556  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        516 TTTTATAACT

                           
        526 TTTAAAAATTAAATA
          1 TTTAAAAATTAAATA

                   *       
        541 TTTAAAATTTAAATA
          1 TTTAAAAATTAAATA

             
        556 T
          1 T

        557 ACTAATACTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45


Consensus pattern (15 bp):   
TTTAAAAATTAAATA
Done.