Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009023.1 Kokia drynarioides strain JFW-HI SEQ_123721, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11573
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:1319 original size:16 final size:16

Alignment explanation


    Indices: 1300--1343  Score: 52
    Period size: 16  Copynumber: 2.8  Consensus size: 16

       1290 TCTTTTTTTG

                            
       1300 TTGAATCATTTTAAGT
          1 TTGAATCATTTTAAGT

                  *    **   
       1316 TTGAATAATTTCGAGT
          1 TTGAATCATTTTAAGT

              *         
       1332 TTCAATCATTTT
          1 TTGAATCATTTT

       1344 GGATTATTTG


Statistics
Matches: 22,  Mismatches: 6, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  16   22  1.00

ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50


Consensus pattern (16 bp):   
TTGAATCATTTTAAGT
Done.