Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009028.1 Kokia drynarioides strain JFW-HI SEQ_123726, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4555
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36


Found at i:3384 original size:20 final size:20

Alignment explanation


    Indices: 3348--3391  Score: 56
    Period size: 19  Copynumber: 2.2  Consensus size: 20

       3338 TCATTTGATG

                                
       3348 TTTATTTTTGTTTTTTAAT-
          1 TTTATTTTTGTTTTTTAATA

                                  
       3367 TTTATTTTT-TATTATTTAATA
          1 TTTATTTTTGT-TT-TTTAATA

                
       3388 TTTA
          1 TTTA

       3392 GTTGTTACTA


Statistics
Matches: 22,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  18    1  0.05
  19   11  0.50
  20    6  0.27
  21    4  0.18

ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75


Consensus pattern (20 bp):   
TTTATTTTTGTTTTTTAATA
Done.