Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009039.1 Kokia drynarioides strain JFW-HI SEQ_123737, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18242
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.32


Found at i:1422 original size:17 final size:18

Alignment explanation


    Indices: 1393--1432  Score: 73
    Period size: 17  Copynumber: 2.3  Consensus size: 18

       1383 TTAACTTGAA

                              
       1393 AATAATAATATAAAAATT
          1 AATAATAATATAAAAATT

                              
       1411 AATAAT-ATATAAAAATT
          1 AATAATAATATAAAAATT

                 
       1428 AATAA
          1 AATAA

       1433 ATCTATATAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  17   16  0.73
  18    6  0.27

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33


Consensus pattern (18 bp):   
AATAATAATATAAAAATT

Found at i:13467 original size:16 final size:18

Alignment explanation


    Indices: 13425--13468  Score: 56
    Period size: 18  Copynumber: 2.6  Consensus size: 18

      13415 AAAAAAATAA

                    *         
      13425 AAAATAATGTTAAGATAT
          1 AAAATAATATTAAGATAT

                *             
      13443 AAAAAAATATTAA-AT-T
          1 AAAATAATATTAAGATAT

                      
      13459 AAAATAATAT
          1 AAAATAATAT

      13469 AAAAAAAACT


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  16   10  0.43
  17    2  0.09
  18   11  0.48

ACGTcount: A:0.64, C:0.00, G:0.05, T:0.32


Consensus pattern (18 bp):   
AAAATAATATTAAGATAT
Done.