Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009047.1 Kokia drynarioides strain JFW-HI SEQ_123746, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2244
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32


Found at i:1483 original size:16 final size:16

Alignment explanation


    Indices: 1462--1492  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1452 TTTTTATTTT

                      *     
       1462 ATTTTAATTATAATAG
          1 ATTTTAATTAGAATAG

                           
       1478 ATTTTAATTAGAATA
          1 ATTTTAATTAGAATA

       1493 AAGTGTTTCA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.45, C:0.00, G:0.06, T:0.48


Consensus pattern (16 bp):   
ATTTTAATTAGAATAG
Done.