Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009057.1 Kokia drynarioides strain JFW-HI SEQ_123757, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5744
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34


Found at i:5503 original size:17 final size:18

Alignment explanation


    Indices: 5481--5516  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

       5471 TAAATGAGTT

                              
       5481 AATTAGGAT-TAAATTGG
          1 AATTAGGATATAAATTGG

                   *          
       5498 AATTAGGGTATAAATTGG
          1 AATTAGGATATAAATTGG

             
       5516 A
          1 A

       5517 TAGAAATTTA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  17    8  0.47
  18    9  0.53

ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33


Consensus pattern (18 bp):   
AATTAGGATATAAATTGG

Done.