Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009059.1 Kokia drynarioides strain JFW-HI SEQ_123759, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1328
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35


Found at i:381 original size:66 final size:67

Alignment explanation


    Indices: 239--382  Score: 150
    Period size: 66  Copynumber: 2.2  Consensus size: 67

        229 TTTTCATCAT

                     *              *              * *              *     *  
        239 ATTTTGAAGCTGTAGCTGCAGTTCGTCATACTTTCTTGTTGCCTCTGCTTCTCTCGTTACTGTCT
          1 ATTTT-AAGTTGTAGCTGCAGTTCATCATACTTTCTTGTAGACTCTGCTTCTCTCGATACTGCCT

               
        304 CCG
         65 CCG

                *            *           *                 *          *      
        307 A-TTGAAGTTGTAGCTGGAGTTCATCATATTTTCTT-TGAGACTCTGTTTCTCTCGATGCTGCCT
          1 ATTTTAAGTTGTAGCTGCAGTTCATCATACTTTCTTGT-AGACTCTGCTTCTCTCGATACTGCCT

               
        370 CC-
         65 CCG

                       
        372 ATTTTAAGTTG
          1 ATTTTAAGTTG

        383 AGCAATTTTC


Statistics
Matches: 62,  Mismatches: 12, Indels: 6
        0.77            0.15        0.08

Matches are distributed among these distances:
  65    2  0.03
  66   57  0.92
  67    2  0.03
  68    1  0.02

ACGTcount: A:0.15, C:0.22, G:0.19, T:0.43


Consensus pattern (67 bp):   
ATTTTAAGTTGTAGCTGCAGTTCATCATACTTTCTTGTAGACTCTGCTTCTCTCGATACTGCCTC
CG
Done.