Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000906.1 Kokia drynarioides strain JFW-HI SEQ_112038, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5070
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:197 original size:53 final size:53

Alignment explanation


    Indices: 140--245  Score: 133
    Period size: 53  Copynumber: 2.0  Consensus size: 53

        130 ATCACTCGAA

                             **                    *              
        140 TATTTATATTATGAATTTGACTTCA-AACTTTTCTTAAATTATTTTTATTTATT
          1 TATTTATATTATGAATTCAACTTCATAACTTTTCTTAAAATA-TTTTATTTATT

                 *    *            *    *                        
        193 TATTTGTATTTTGAATTCAACTTTATAATTTTTCTTAAAATATTTTATTTATT
          1 TATTTATATTATGAATTCAACTTCATAACTTTTCTTAAAATATTTTATTTATT

        246 AATATTTAAA


Statistics
Matches: 45,  Mismatches: 7, Indels: 2
        0.83            0.13        0.04

Matches are distributed among these distances:
  53   31  0.69
  54   14  0.31

ACGTcount: A:0.30, C:0.07, G:0.04, T:0.59


Consensus pattern (53 bp):   
TATTTATATTATGAATTCAACTTCATAACTTTTCTTAAAATATTTTATTTATT
Done.