Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009060.1 Kokia drynarioides strain JFW-HI SEQ_123760, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 796

Length: 1327
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35


Found at i:380 original size:66 final size:67

Alignment explanation


    Indices: 238--381  Score: 159
    Period size: 66  Copynumber: 2.2  Consensus size: 67

        228 TTTTCATTAT

                     *                             * *              *     *  
        238 ATTTTGAAGCTGTAGCTGCAGTTCATCATACTTTCTTGTTGCCTCTGCTTCTCTCGTTACTGTCT
          1 ATTTT-AAGTTGTAGCTGCAGTTCATCATACTTTCTTGTAGACTCTGCTTCTCTCGATACTGCCT

               
        303 CCG
         65 CCG

                *            *           *                    *       *      
        306 A-TTGAAGTTGTAGCTGGAGTTCATCATATTTTCTT-TGAGACTCTGCTTGTCTCGATGCTGCCT
          1 ATTTTAAGTTGTAGCTGCAGTTCATCATACTTTCTTGT-AGACTCTGCTTCTCTCGATACTGCCT

               
        369 CC-
         65 CCG

                       
        371 ATTTTAAGTTG
          1 ATTTTAAGTTG

        382 AGCAATTCTC


Statistics
Matches: 63,  Mismatches: 11, Indels: 6
        0.79            0.14        0.08

Matches are distributed among these distances:
  65    2  0.03
  66   58  0.92
  67    2  0.03
  68    1  0.02

ACGTcount: A:0.16, C:0.22, G:0.19, T:0.42


Consensus pattern (67 bp):   
ATTTTAAGTTGTAGCTGCAGTTCATCATACTTTCTTGTAGACTCTGCTTCTCTCGATACTGCCTC
CG
Done.