Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009062.1 Kokia drynarioides strain JFW-HI SEQ_123762, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2441
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.37


Found at i:603 original size:43 final size:43

Alignment explanation


    Indices: 550--725  Score: 201
    Period size: 43  Copynumber: 4.1  Consensus size: 43

        540 CTGTTAATGT

                 *       *                             
        550 TAGTGGCGTTTGTAGGAAAAGCGCCGCTAAAGATCATGTTCTA
          1 TAGTGACGTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTA

                                  *  *        *      *  
        593 TAGTGACGTTTGTGGGAAAAGGTGCTGCTAAAGACCATGTTTTA
          1 TAGTGACGTTTGTGGGAAAA-GCGCCGCTAAAGATCATGTTCTA

                                 **    *    *           
        637 TAGT-AGCGTTTGTGGGAAAAAAGCCGTTAAAAATCATGTTCTA
          1 TAGTGA-CGTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTA

              ** *                   *                 
        680 TAACGGCGTTTGTGGGAAAAGCGCCTCTAAAGATCATGTTCTA
          1 TAGTGACGTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTA

               
        723 TAG
          1 TAG

        726 CAACGTTTTC


Statistics
Matches: 108,  Mismatches: 22, Indels: 6
        0.79            0.16        0.04

Matches are distributed among these distances:
  43   71  0.66
  44   37  0.34

ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30


Consensus pattern (43 bp):   
TAGTGACGTTTGTGGGAAAAGCGCCGCTAAAGATCATGTTCTA

Found at i:1036 original size:101 final size:101

Alignment explanation


    Indices: 920--1116  Score: 376
    Period size: 101  Copynumber: 2.0  Consensus size: 101

        910 TTAACAAGAA

                                                                             
        920 TAAATCTTCCAAAAATGATAAAAATGTGCAAGCACATTTGTATGATTAATAATAATGATAACAAT
          1 TAAATCTTCCAAAAATGATAAAAATGTGCAAGCACATTTGTATGATTAATAATAATGATAACAAT

              *                                 
        985 GATAAGAAGTTGTTTCCTGCCAAGTGGAAATCTTGC
         66 GACAAGAAGTTGTTTCCTGCCAAGTGGAAATCTTGC

                                                                             
       1021 TAAATCTTCCAAAAATGATAAAAATGTGCAAGCACATTTGTATGATTAATAATAATGATAACAAT
          1 TAAATCTTCCAAAAATGATAAAAATGTGCAAGCACATTTGTATGATTAATAATAATGATAACAAT

                                  *        
       1086 GACAAGAAGTTGTTTCCTGCCACGTGGAAAT
         66 GACAAGAAGTTGTTTCCTGCCAAGTGGAAAT

       1117 TTATGGAATC


Statistics
Matches: 94,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 101   94  1.00

ACGTcount: A:0.41, C:0.13, G:0.16, T:0.30


Consensus pattern (101 bp):   
TAAATCTTCCAAAAATGATAAAAATGTGCAAGCACATTTGTATGATTAATAATAATGATAACAAT
GACAAGAAGTTGTTTCCTGCCAAGTGGAAATCTTGC
Done.