Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009064.1 Kokia drynarioides strain JFW-HI SEQ_123764, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2277
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37


Found at i:1000 original size:18 final size:18

Alignment explanation


    Indices: 979--1015  Score: 74
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        969 ATAATATCCA

                              
        979 AGTCATGTATAAATAACC
          1 AGTCATGTATAAATAACC

                              
        997 AGTCATGTATAAATAACC
          1 AGTCATGTATAAATAACC

             
       1015 A
          1 A

       1016 TATGCACCAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   19  1.00

ACGTcount: A:0.46, C:0.16, G:0.11, T:0.27


Consensus pattern (18 bp):   
AGTCATGTATAAATAACC
Done.