Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009065.1 Kokia drynarioides strain JFW-HI SEQ_123765, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3538
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:1965 original size:19 final size:19

Alignment explanation


    Indices: 1931--1970  Score: 55
    Period size: 18  Copynumber: 2.1  Consensus size: 19

       1921 TAATTAAAAA

                               
       1931 TAAAAAAAAGAAAACA-AT
          1 TAAAAAAAAGAAAACAGAT

                     *          
       1949 TAAAAAAAATAACAACAGAT
          1 TAAAAAAAAGAA-AACAGAT

              
       1969 TA
          1 TA

       1971 GTAAATATTA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  18   11  0.58
  19    4  0.21
  20    4  0.21

ACGTcount: A:0.72, C:0.07, G:0.05, T:0.15


Consensus pattern (19 bp):   
TAAAAAAAAGAAAACAGAT
Done.