genome.fa.s9066.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009066.1 Kokia drynarioides strain JFW-HI SEQ_123766, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86477

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648--689	14	2.8	15	75	10	50	52	0	2	45	1.13
3045--3271	30	7.6	30	75	5	199	37	22	3	35	1.73
3034--3273	60	4.0	59	79	6	241	37	22	4	35	1.74
3044--3270	119	1.9	121	81	3	280	37	22	3	35	1.73
13746--13781	3	12.0	3	93	0	63	30	0	2	66	1.06
19090--19266	50	3.6	50	79	6	166	36	20	21	22	1.96
19108--19300	99	1.9	99	80	7	221	37	18	21	21	1.94
19096--19313	99	2.2	98	77	8	217	38	19	19	22	1.94
19434--19726	39	7.4	39	69	6	223	31	25	17	25	1.97
19434--19722	158	1.8	158	91	0	479	31	24	17	25	1.97
19434--19726	79	3.7	78	89	0	433	31	25	17	25	1.97
21203--21256	27	2.0	28	85	3	74	38	1	25	33	1.67
23232--23256	2	12.5	2	100	0	50	52	0	0	48	1.00
24133--24324	40	4.8	40	84	1	253	26	14	18	40	1.89
24131--24324	79	2.5	80	84	2	248	26	14	18	39	1.90
27455--27483	13	2.1	14	93	6	51	20	13	6	58	1.58
27480--27518	21	1.9	21	89	5	62	28	15	10	46	1.78
29879--29938	28	2.1	28	82	11	70	45	8	11	35	1.71
31612--31768	40	4.0	40	84	3	183	24	17	20	37	1.93
36997--37095	22	4.4	22	84	7	119	10	27	23	39	1.86
40897--40987	26	3.5	26	87	1	112	24	17	23	35	1.95
40905--41000	26	3.7	25	85	2	111	26	15	25	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42283--42450	24	7.0	24	81	0	129	37	15	26	20	1.92
44986--45041	7	8.0	7	87	0	67	16	23	25	35	1.94
44976--45041	21	3.3	20	77	10	64	16	25	24	33	1.96
50038--50189	7	21.9	7	76	6	121	21	23	23	32	1.98
50049--50169	56	2.2	56	83	8	158	23	23	23	29	1.99
55134--55183	18	2.8	18	87	0	73	26	44	4	26	1.72
55374--55545	62	2.8	60	84	6	209	33	7	8	50	1.62
56521--56553	15	2.2	15	89	10	50	72	0	0	27	0.85
57684--57722	11	4.0	9	87	12	51	82	0	5	12	0.83
57686--57729	20	2.2	20	88	8	63	77	0	4	18	0.94
58557--58634	24	3.2	24	90	0	120	39	20	12	26	1.89
59535--59577	12	3.5	12	78	6	50	41	4	2	51	1.35
60107--60142	19	1.9	19	88	5	56	55	0	5	38	1.23
61742--61766	13	1.9	13	100	0	50	16	0	4	80	0.87
61825--61864	12	3.5	11	83	10	53	15	7	7	70	1.33
62728--62837	53	2.1	52	91	3	184	20	10	14	55	1.67
67581--67653	29	2.5	28	73	6	83	60	8	4	27	1.44
68705--68901	51	3.8	52	73	7	179	14	19	21	44	1.87
68907--69265	49	7.3	48	72	5	211	18	21	18	41	1.90
68947--69268	147	2.2	147	79	2	333	18	22	18	40	1.91
68911--69271	98	3.7	98	78	3	298	18	21	18	41	1.91
68868--69300	98	4.4	99	73	7	283	18	21	18	41	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71530--71604	23	3.3	23	83	14	111	37	25	22	14	1.92
73512--73546	13	2.6	14	86	9	54	60	2	0	37	1.12
75908--76008	51	2.0	51	90	7	161	24	20	27	26	1.99

Tables:   1

The End!