Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009068.1 Kokia drynarioides strain JFW-HI SEQ_123768, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4843
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33


Found at i:941 original size:17 final size:17

Alignment explanation


    Indices: 919--961  Score: 68
    Period size: 17  Copynumber: 2.5  Consensus size: 17

        909 CTATTAGTAA

                             
        919 TCATTGTCATTACATTC
          1 TCATTGTCATTACATTC

                            *
        936 TCATTGTCATTACATTT
          1 TCATTGTCATTACATTC

             *       
        953 TAATTGTCA
          1 TCATTGTCA

        962 CTGCATTTGC


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  17   24  1.00

ACGTcount: A:0.26, C:0.19, G:0.07, T:0.49


Consensus pattern (17 bp):   
TCATTGTCATTACATTC
Done.