Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009070.1 Kokia drynarioides strain JFW-HI SEQ_123770, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5052
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37


Found at i:1226 original size:26 final size:26

Alignment explanation


    Indices: 1197--1247  Score: 102
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1187 TTTCAATCAG

                                      
       1197 TTTTCTCATTTTTTATTAGACTAAGA
          1 TTTTCTCATTTTTTATTAGACTAAGA

                                     
       1223 TTTTCTCATTTTTTATTAGACTAAG
          1 TTTTCTCATTTTTTATTAGACTAAG

       1248 GATATGTTTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.25, C:0.12, G:0.08, T:0.55


Consensus pattern (26 bp):   
TTTTCTCATTTTTTATTAGACTAAGA

Found at i:3218 original size:25 final size:25

Alignment explanation


    Indices: 3190--3286  Score: 122
    Period size: 25  Copynumber: 3.9  Consensus size: 25

       3180 ATATCTTGTT

                    * *              
       3190 TGGCTCATTATAGTGATATTCTATC
          1 TGGCTCATAAAAGTGATATTCTATC

                         *        *  
       3215 TGGCTCATAAAAGCGATATTCTGTC
          1 TGGCTCATAAAAGTGATATTCTATC

              *   *   *    *         
       3240 TGACTCGTAAGAGTGGTATTCTATC
          1 TGGCTCATAAAAGTGATATTCTATC

                                  
       3265 TGGCTCATAAAAGTGATATTCT
          1 TGGCTCATAAAAGTGATATTCT

       3287 GTTTGGGATC


Statistics
Matches: 58,  Mismatches: 14, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  25   58  1.00

ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37


Consensus pattern (25 bp):   
TGGCTCATAAAAGTGATATTCTATC
Done.