Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009071.1 Kokia drynarioides strain JFW-HI SEQ_123771, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5853
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36


Found at i:690 original size:26 final size:26

Alignment explanation


    Indices: 654--704  Score: 102
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        644 GAAACATATC

                                      
        654 CTTAGTCTAATAAAAAATGAGAAAAT
          1 CTTAGTCTAATAAAAAATGAGAAAAT

                                     
        680 CTTAGTCTAATAAAAAATGAGAAAA
          1 CTTAGTCTAATAAAAAATGAGAAAA

        705 CTGATTGAAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.55, C:0.08, G:0.12, T:0.25


Consensus pattern (26 bp):   
CTTAGTCTAATAAAAAATGAGAAAAT

Found at i:4449 original size:18 final size:20

Alignment explanation


    Indices: 4428--4475  Score: 55
    Period size: 22  Copynumber: 2.4  Consensus size: 20

       4418 CCAATATTAT

                                
       4428 TATTTAAT-TTTT-TTTAAA
          1 TATTTAATGTTTTATTTAAA

                               *  
       4446 TATTTATATTGTTTTATTTTAA
          1 TATTTA-A-TGTTTTATTTAAA

                    
       4468 TATTTAAT
          1 TATTTAAT

       4476 AATTTTATAC


Statistics
Matches: 25,  Mismatches: 1, Indels: 6
        0.78            0.03        0.19

Matches are distributed among these distances:
  18    6  0.24
  19    1  0.04
  20    2  0.08
  21    5  0.20
  22   11  0.44

ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67


Consensus pattern (20 bp):   
TATTTAATGTTTTATTTAAA
Done.