Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009072.1 Kokia drynarioides strain JFW-HI SEQ_123772, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4209
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35


Found at i:3955 original size:25 final size:25

Alignment explanation


    Indices: 3927--3976  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       3917 ATGTTCCCGA

                                     
       3927 ACGTTTTATATAATTATATTTCAAT
          1 ACGTTTTATATAATTATATTTCAAT

                     *               
       3952 ACGTTTTATGTAATTATATTTCAAT
          1 ACGTTTTATATAATTATATTTCAAT

       3977 CTGGTGTTGA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.34, C:0.08, G:0.06, T:0.52


Consensus pattern (25 bp):   
ACGTTTTATATAATTATATTTCAAT
Done.