Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009076.1 Kokia drynarioides strain JFW-HI SEQ_123776, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2784
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.38


Found at i:1522 original size:41 final size:42

Alignment explanation


    Indices: 1459--1555  Score: 110
    Period size: 41  Copynumber: 2.4  Consensus size: 42

       1449 CTTTTAAAAT

                      *                  ***        * 
       1459 TATATA-AAAATAAATTAAAAATTAAAAATTTATCTC-TTGA
          1 TATATATAAAGTAAATTAAAAATTAAAAAACCATCTCTTTAA

                               *                       
       1499 -ATATATAAAGTAAATTTATAAATTAAAAAACCATCTCTTTAA
          1 TATATATAAAGTAAA-TTAAAAATTAAAAAACCATCTCTTTAA

                           
       1541 TATATATAAAGTAAA
          1 TATATATAAAGTAAA

       1556 ATATATTTAC


Statistics
Matches: 47,  Mismatches: 6, Indels: 5
        0.81            0.10        0.09

Matches are distributed among these distances:
  39    5  0.11
  40    7  0.15
  41   18  0.38
  42    3  0.06
  43   14  0.30

ACGTcount: A:0.55, C:0.06, G:0.03, T:0.36


Consensus pattern (42 bp):   
TATATATAAAGTAAATTAAAAATTAAAAAACCATCTCTTTAA
Done.