Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009085.1 Kokia drynarioides strain JFW-HI SEQ_123785, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5395
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:1163 original size:23 final size:23

Alignment explanation


    Indices: 1115--1170  Score: 69
    Period size: 24  Copynumber: 2.4  Consensus size: 23

       1105 TTAATATATG

                      *            
       1115 AAATATTAATTTTAAATATTTCA
          1 AAATATTAATATTAAATATTTCA

                            *     * 
       1138 AAATAGTTAATATTAATTATTTAA
          1 AAATA-TTAATATTAAATATTTCA

                      
       1162 AAAT-TTAAT
          1 AAATATTAAT

       1171 TAGATTATAT


Statistics
Matches: 29,  Mismatches: 3, Indels: 3
        0.83            0.09        0.09

Matches are distributed among these distances:
  22    5  0.17
  23    5  0.17
  24   19  0.66

ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46


Consensus pattern (23 bp):   
AAATATTAATATTAAATATTTCA
Done.