Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009086.1 Kokia drynarioides strain JFW-HI SEQ_123786, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1971
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37


Found at i:1187 original size:97 final size:100

Alignment explanation


    Indices: 1066--1403  Score: 305
    Period size: 100  Copynumber: 3.4  Consensus size: 100

       1056 ATCTGCTTCT

                         * *           **                        *   *       
       1066 CTGCAACTTCAAGAAGATAGGATTTGACATTGTAGCCTT-ATCTTGCTCCACTGCATTTTC-AGG
          1 CTGCAACTTCAAGGATATAGGATTTGATGTTGTAG-CTTCATCTTGCTCCACTACATCTTCTAGG

                                                  
       1129 TAGATAAGATTTAC-T-T-TAACTT-AAGTCCAATCCA
         65 -AGATAAGATTTACTTCTGTAACTTCAA-TCCAATCCA

               *                          *               *  *               
       1163 CTGTAACTTCAAGGATATAGGATTTGATGTCGTAGCTTCATCTTGCCCCGCTACATCTTCTAGGA
          1 CTGCAACTTCAAGGATATAGGATTTGATGTTGTAGCTTCATCTTGCTCCACTACATCTTCTAGGA

                      *        *         *     
       1228 GATAAGATTTGCTTCTGTAGCTTCAATCCGATCCA
         66 GATAAGATTTACTTCTGTAACTTCAATCCAATCCA

                       *  *    *                           **      *         
       1263 CTGCAACTTCAGGGGTATACGATTTGATGTTGTAGCTTCATCTTGCTTTACTACAACTT-TAGAG
          1 CTGCAACTTCAAGGATATAGGATTTGATGTTGTAGCTTCATCTTGCTCCACTACATCTTCTAG-G

                        *  *  *  **  *     *     
       1327 AGATAAAGATTTGCTACTATAGTTTTAATCCGATCCA
         65 AGAT-AAGATTTACTTCTGTAACTTCAATCCAATCCA

              *                        *       *     
       1364 CTACAACTT-AAGAGATATAGGATTTGGTGTTGTAACTTCA
          1 CTGCAACTTCAAG-GATATAGGATTTGATGTTGTAGCTTCA

       1404 CTTCGTTTCA


Statistics
Matches: 199,  Mismatches: 33, Indels: 14
        0.81            0.13        0.06

Matches are distributed among these distances:
  96    3  0.02
  97   58  0.29
  98    4  0.02
  99    4  0.02
 100   69  0.35
 101   61  0.31

ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35


Consensus pattern (100 bp):   
CTGCAACTTCAAGGATATAGGATTTGATGTTGTAGCTTCATCTTGCTCCACTACATCTTCTAGGA
GATAAGATTTACTTCTGTAACTTCAATCCAATCCA

Done.