Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009091.1 Kokia drynarioides strain JFW-HI SEQ_123791, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7947
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34


Found at i:4059 original size:82 final size:82

Alignment explanation


    Indices: 3940--4094  Score: 195
    Period size: 82  Copynumber: 1.9  Consensus size: 82

       3930 GGTGAAAGTG

                *            *     *                         *    *          
       3940 TTTTTAAGTGAAATGCAGAAAAATGTTTCTAGCTGGAAGTGCTTTCCGCGTAGTGCCAATAAAAC
          1 TTTTCAAGTGAAATGCAAAAAAAAGTTTCTAGCTGGAAGTGCTTTCCGCATAGTACCAATAAAAC

               *             
       4005 GCTTTCAATTGGAAGCA
         66 GCTATCAATTGGAAGCA

                      *                      *            *     *      *     
       4022 TTTTCAAGTGGAATGCAAAAAAAAGCTTT-TAGTTGGAAGTGCTTTTCGCATGGTACCAGTAAAA
          1 TTTTCAAGTGAAATGCAAAAAAAAG-TTTCTAGCTGGAAGTGCTTTCCGCATAGTACCAATAAAA

                     
       4086 CGCTATCAA
         65 CGCTATCAA

       4095 AAGAAAAACG


Statistics
Matches: 61,  Mismatches: 11, Indels: 2
        0.82            0.15        0.03

Matches are distributed among these distances:
  82   58  0.95
  83    3  0.05

ACGTcount: A:0.33, C:0.15, G:0.21, T:0.30


Consensus pattern (82 bp):   
TTTTCAAGTGAAATGCAAAAAAAAGTTTCTAGCTGGAAGTGCTTTCCGCATAGTACCAATAAAAC
GCTATCAATTGGAAGCA
Done.