Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009093.1 Kokia drynarioides strain JFW-HI SEQ_123793, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4441
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34


Found at i:3054 original size:31 final size:29

Alignment explanation


    Indices: 3019--3099  Score: 92
    Period size: 29  Copynumber: 2.8  Consensus size: 29

       3009 TTAATAACTC

                          *         *   *  
       3019 AGTGACTAAAATGTTACAATATGATAACGTA
          1 AGTGACTAAAATGTAAC-AT-TGAAAACATA

                       *        *        
       3050 AGTGACTAAAACGTAACATTTAAAACATA
          1 AGTGACTAAAATGTAACATTGAAAACATA

                                  
       3079 AGTGACTAAAATGTAAC-TTGA
          1 AGTGACTAAAATGTAACATTGA

       3100 GACAAACAAA


Statistics
Matches: 43,  Mismatches: 7, Indels: 3
        0.81            0.13        0.06

Matches are distributed among these distances:
  28    3  0.07
  29   23  0.53
  30    2  0.05
  31   15  0.35

ACGTcount: A:0.47, C:0.11, G:0.15, T:0.27


Consensus pattern (29 bp):   
AGTGACTAAAATGTAACATTGAAAACATA

Found at i:3430 original size:22 final size:22

Alignment explanation


    Indices: 3402--3452  Score: 66
    Period size: 22  Copynumber: 2.3  Consensus size: 22

       3392 CAATCTTAAA

                      *           
       3402 TAATAAAAATGAATAAAATTTT
          1 TAATAAAAATCAATAAAATTTT

                          ** *    
       3424 TAATAAAAATCAATTTATTTTT
          1 TAATAAAAATCAATAAAATTTT

                   
       3446 TAATAAA
          1 TAATAAA

       3453 GATATATAAA


Statistics
Matches: 25,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   25  1.00

ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41


Consensus pattern (22 bp):   
TAATAAAAATCAATAAAATTTT
Done.