Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009097.1 Kokia drynarioides strain JFW-HI SEQ_123798, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3849
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31


Found at i:3651 original size:31 final size:32

Alignment explanation


    Indices: 3616--3696  Score: 105
    Period size: 31  Copynumber: 2.6  Consensus size: 32

       3606 TTTGGGTTAG

                                             
       3616 GACTAAAATT-TCAAAATTCAAAAAATA-AAGA
          1 GACTAAAATTGTC-AAATTCAAAAAATATAAGA

                         *                  
       3647 GACTAAAATTGTCCAATTCAAAAAATATAAGA
          1 GACTAAAATTGTCAAATTCAAAAAATATAAGA

              *                
       3679 -ATTAAAATTGATCAAATT
          1 GACTAAAATTG-TCAAATT

       3697 AAAGTATAAA


Statistics
Matches: 44,  Mismatches: 3, Indels: 5
        0.85            0.06        0.10

Matches are distributed among these distances:
  31   32  0.73
  32   12  0.27

ACGTcount: A:0.56, C:0.10, G:0.07, T:0.27


Consensus pattern (32 bp):   
GACTAAAATTGTCAAATTCAAAAAATATAAGA
Done.