Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009098.1 Kokia drynarioides strain JFW-HI SEQ_123799, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3832
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31


Found at i:3094 original size:13 final size:13

Alignment explanation


    Indices: 3076--3112  Score: 51
    Period size: 13  Copynumber: 2.9  Consensus size: 13

       3066 CAAAACAAAA

                         
       3076 TAAATTTAAGTTC
          1 TAAATTTAAGTTC

                          
       3089 TAAATTTAAGCTTC
          1 TAAATTTAAG-TTC

                        
       3103 --AATTTAAGTT
          1 TAAATTTAAGTT

       3113 TTCAAAATTT


Statistics
Matches: 23,  Mismatches: 0, Indels: 4
        0.85            0.00        0.15

Matches are distributed among these distances:
  11    2  0.09
  12    8  0.35
  13   10  0.43
  14    3  0.13

ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46


Consensus pattern (13 bp):   
TAAATTTAAGTTC

Found at i:3634 original size:31 final size:32

Alignment explanation


    Indices: 3599--3679  Score: 105
    Period size: 31  Copynumber: 2.6  Consensus size: 32

       3589 TTTGGGTTAG

                                             
       3599 GACTAAAATT-TCAAAATTCAAAAAATA-AAGA
          1 GACTAAAATTGTC-AAATTCAAAAAATATAAGA

                         *                  
       3630 GACTAAAATTGTCCAATTCAAAAAATATAAGA
          1 GACTAAAATTGTCAAATTCAAAAAATATAAGA

              *                
       3662 -ATTAAAATTGATCAAATT
          1 GACTAAAATTG-TCAAATT

       3680 AAAGTATAAA


Statistics
Matches: 44,  Mismatches: 3, Indels: 5
        0.85            0.06        0.10

Matches are distributed among these distances:
  31   32  0.73
  32   12  0.27

ACGTcount: A:0.56, C:0.10, G:0.07, T:0.27


Consensus pattern (32 bp):   
GACTAAAATTGTCAAATTCAAAAAATATAAGA
Done.