Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009099.1 Kokia drynarioides strain JFW-HI SEQ_123800, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5877
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.42


Found at i:5325 original size:18 final size:20

Alignment explanation


    Indices: 5293--5330  Score: 53
    Period size: 19  Copynumber: 2.0  Consensus size: 20

       5283 TATAATACCA

                                
       5293 ACCTCAACCTGCCA-TAAAG
          1 ACCTCAACCTGCCATTAAAG

                      *         
       5312 ACCTC-ACCTTCCATTAAAG
          1 ACCTCAACCTGCCATTAAAG

       5331 GTGATCTACA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.34, C:0.37, G:0.08, T:0.21


Consensus pattern (20 bp):   
ACCTCAACCTGCCATTAAAG
Done.