Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009100.1 Kokia drynarioides strain JFW-HI SEQ_123801, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4341
ACGTcount: A:0.36, C:0.11, G:0.15, T:0.38


Found at i:3793 original size:30 final size:31

Alignment explanation


    Indices: 3758--3816  Score: 77
    Period size: 30  Copynumber: 1.9  Consensus size: 31

       3748 CAACCAAGAC

                                            
       3758 TTTTATCTCTTAAAAT-TGA-AAAATTATAGT
          1 TTTTATCTCTTAAAATAT-ATAAAATTATAGT

                  * *                    
       3788 TTTTATTTTTTAAAATATATAAAATTATA
          1 TTTTATCTCTTAAAATATATAAAATTATA

       3817 AATTAATAAT


Statistics
Matches: 25,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  30   15  0.60
  31   10  0.40

ACGTcount: A:0.42, C:0.03, G:0.03, T:0.51


Consensus pattern (31 bp):   
TTTTATCTCTTAAAATATATAAAATTATAGT

Found at i:4234 original size:18 final size:16

Alignment explanation


    Indices: 4190--4234  Score: 54
    Period size: 17  Copynumber: 2.6  Consensus size: 16

       4180 CCATTTTAAA

                             
       4190 TTTGTAATATTTTATAT
          1 TTTGTAAT-TTTTATAT

                 *          
       4207 TTTGTTATTTTTATAT
          1 TTTGTAATTTTTATAT

                        
       4223 ATTCTGTAATTT
          1 -TT-TGTAATTT

       4235 AGAATACATT


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  16    8  0.33
  17    9  0.38
  18    7  0.29

ACGTcount: A:0.24, C:0.02, G:0.07, T:0.67


Consensus pattern (16 bp):   
TTTGTAATTTTTATAT
Done.