Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009102.1 Kokia drynarioides strain JFW-HI SEQ_123803, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4613
ACGTcount: A:0.34, C:0.13, G:0.21, T:0.33


Found at i:425 original size:17 final size:18

Alignment explanation


    Indices: 403--442  Score: 55
    Period size: 20  Copynumber: 2.2  Consensus size: 18

        393 TCACTGACGA

                              
        403 TGACGA-CGATGGTGGTC
          1 TGACGAGCGATGGTGGTC

                                
        420 TGACGATGGCGATGGTGGTC
          1 TGACGA--GCGATGGTGGTC

               
        440 TGA
          1 TGA

        443 TGACTCGAAA


Statistics
Matches: 20,  Mismatches: 0, Indels: 3
        0.87            0.00        0.13

Matches are distributed among these distances:
  17    6  0.30
  20   14  0.70

ACGTcount: A:0.17, C:0.15, G:0.42, T:0.25


Consensus pattern (18 bp):   
TGACGAGCGATGGTGGTC

Found at i:2652 original size:25 final size:25

Alignment explanation


    Indices: 2623--2674  Score: 104
    Period size: 25  Copynumber: 2.1  Consensus size: 25

       2613 TAATAACTAA

                                     
       2623 AAAGTAATTGAAGGACCAATTATGT
          1 AAAGTAATTGAAGGACCAATTATGT

                                     
       2648 AAAGTAATTGAAGGACCAATTATGT
          1 AAAGTAATTGAAGGACCAATTATGT

              
       2673 AA
          1 AA

       2675 TTGGACCCTC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   27  1.00

ACGTcount: A:0.46, C:0.08, G:0.19, T:0.27


Consensus pattern (25 bp):   
AAAGTAATTGAAGGACCAATTATGT

Done.