Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01009108.1 Kokia drynarioides strain JFW-HI SEQ_123809, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 14913
ACGTcount: A:0.29, C:0.18, G:0.14, T:0.39
Found at i:1032 original size:20 final size:20
Alignment explanation
Indices: 1007--1045 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
997 TACTGAATTG
1007 AATACACAACAT-ATTTCATC
1 AATACACAA-ATAATTTCATC
1027 AATACACAAATAATTTCAT
1 AATACACAAATAATTTCAT
1046 TCTAACTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.49, C:0.21, G:0.00, T:0.31
Consensus pattern (20 bp):
AATACACAAATAATTTCATC
Found at i:4061 original size:216 final size:216
Alignment explanation
Indices: 3676--10812 Score: 5276
Period size: 216 Copynumber: 33.5 Consensus size: 216
3666 GTAATTAGTA
* * *
3676 CTTGGTT-TTCGGACGAACTTTCGAACATGTCAAACTCTTATTGGTTCTTTTATAACTTTGGTTC
1 CTTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTC
* * ** * * *
3740 CTTGAAGTATTCATGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCCTGCTCGAGAAATC
65 CTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATC
* * ** * * * *
3805 TTATCATGTAATCTAAATAGGTTGTCAATTTGTAAACAACTTTTGGTGTTTGAATTAAAAACCTA
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* *
3870 GTCACGTGAGAATTGTTTCTTT
195 TTCACGTGAGAATTGTTTCTCT
* * *
3892 CATGGTTCTTTGACGAACTTCCGAACTTGTCAAACTTTTATTGGTTCTTTTATAACTTCGGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * ** *
3957 TTAAAGTATTCATGGCGATCCATTCCTTTGAGTAATTTCCTAAACACACCATGCTCGGGAAATAG
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATCG
* * * * *
4022 TATTATTCGGTCTAAATAATTTGTTATTTTGTAAACAAC---T--T-TTTGTATTAAAAACTTAT
131 TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* *
4081 TCACGGGATAA-TGTTTTCTCT
196 TCACGTGAGAATTG-TTTCTCT
* * * *
4102 CTTGGTTCTTAGACAAACTTCCAAACTTGTCAAACTCTTATTGGTTATTTTATAACTTCGGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * * * *
4167 TTAAAGTATTCAAGGTGATCCATTCCTTCGAACAATTTTTTGAACATTCCATACTCAGGAAATCT
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATCG
* * * * *
4232 TATAATTTAGTCTAAATAGTTTGTCATTCTGTAAACAACTATTGGTCTTTGAATTAAAAATTTAT
131 TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
*
4297 TCACGTCAGAATTGTTTCTCT
196 TCACGTGAGAATTGTTTCTCT
* *** * * * * *
4318 CTTGGTTCTTGGATGAACTTTAAAACTTGTCAAATTTTTATTGGTTCTTTAATAACTTTGGTTCT
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * *
4383 TTAAAGTATTCAAGGCGAT-CAGTTCCTTTGAGAAATTTT-TCGAACATTCCATGTTCGAGAAAT
66 TTAAAGTATTCAAGGCGATCCA-TTCCTTCGAGCAATTTTCT-AAACATTCCATGCTCGGGAAAT
** * * *** *
4446 AATTTCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTCCATCTTTGAATTAAAAGCTT
129 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
*
4511 ATTTACGTGAGAATTGTTTCTCT
194 ATTCACGTGAGAATTGTTTCTCT
* * * *
4534 CTTGGTT-TTGGGATGAACTTCCAAACTTGTCAAACTCTTTTTGGTTCTTTTATAACTTCGATTC
1 CTTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTC
* * *
4598 CTTAAAGTACTT-AA-GCTGATCCGTTCCTTCGAGCAATTTT-AAGAACATTCCTTGCTCGGGAA
65 CTTAAAGTA-TTCAAGGC-GATCCATTCCTTCGAGCAATTTTCTA-AACATTCCATGCTCGGGAA
* *
4660 ATCGTATCATTTGGTTTAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
127 ATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
4725 TTATTCACGTGAGAATTGTTTCTCT
192 TTATTCACGTGAGAATTGTTTCTCT
* * *
4750 CTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTCTTATTGGTTCTTTTCTAACTTCTGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * ** * *
4815 TTAAAGTATTCATGGTGATCCGTTCCTTTGAGCAATTTTCTGGACATTCGATGCTCGGGAAATTG
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATCG
* *
4880 TATCATTTGGTC-AAA-A-----T-A----GT-TACAACTTTTGGTCTTTGAATTAAAAAGTTAT
131 TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * *
4932 TTACATAAGAATTGTTTCTCT
196 TCACGTGAGAATTGTTTCTCT
* * *** * *
4953 CTTGGTTCTT-G-CTGAACTTCCAAACTTGTCAAACTTTTACAAGTTATTTTATCACTT-GAGTT
1 CTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCG-GTT
* * *** * * *
5015 CCTAAAAGCATTCAAAATGATCCATTCCTTCAAGAAATTTT-TCGAACATTCCATGCTCGGGAAA
64 CCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCT-AAACATTCCATGCTCGGGAAA
** * * * * * * *
5079 TCACATAATATGGTGTCAATAGTTTTTCATATTGTAAACAACTTTT-GTCTTTTAATTAAAAACT
128 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * ** *
5143 TATTTATGTGAGAACTAATTCTTT
193 TATTCACGTGAGAATTGTTTCTCT
* * * * * **
5167 ACAT-GTTCTT-GACCGAACTTTCGAACTTGTCAAACTTTTA-CGAGTTCTTTAATAACTTTAGT
1 -CTTGGTTCTTGGA-CGAACTTCCGAACTTGTCAAACTCTTATTG-GTTCTTTTATAACTTCGGT
*** * * * * **
5229 TTAATAAAGTATTCAAGGCGATCCCTTCCTTTGAGCAATTTTAC-GATCATTCCATGCTCGATAA
63 TCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTT-CTAAACATTCCATGCTCGGGAA
* * * * *
5293 ATTGAATCATTTGGTCTTAATAGTTTTTCATTTTGGAAACAGA-TTTTGGTCTTTGAATTAAAAA
127 ATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-ACTTTTGGTCTTTGAATTAAAAA
* *
5357 CTTATTCACGTGAGAATTATTTCTAT
191 CTTATTCACGTGAGAATTGTTTCTCT
* * * * * *
5383 CTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTCTTATTGGTTCATTAATTACTTCAGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * * * * *
5448 TTATAGTATTCAAGGTGATTCGTTCTTTCGAGCAACTTTTC-AAAAAGTCCATGCTCAGGAAATC
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAA-TTTTCTAAACATTCCATGCTCGGGAAATC
* * *
5512 ATATCATTTGGTCTAAATAGTTTGTCATTTTGTAGACAACTTTTGGTCTTTGAATTAAAAGCTTA
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
*
5577 TTCTCGTGAGAATTGTTTCTCT
195 TTCACGTGAGAATTGTTTCTCT
* *
5599 GTTGGTTCTTGGACGAACTTCTGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * * * *
5664 TTAAAGTATTCATGGCGATCCGTTCCTTCAAGCAATTTTTTGAACATTCCATGCTAGGGAAATCT
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATCG
* * * *
5729 TATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTAGGTATTTGAATTAAAAATTTAT
131 TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* *
5794 TCATGTGAGAATTGTTTCTGT
196 TCACGTGAGAATTGTTTCTCT
* * * * *
5815 CTTGGTTCTTGG-CCAATCATCCGAACTTGTCAAACTTTTATTAGTTC-TTTATTTACTT-GAGT
1 CTTGGTTCTTGGACGAA-CTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTA-TAACTTCG-GT
* * * * * * *
5877 TTCATAAAGTTTTCAAGGCGATCCA-TCCTTCGAGCAATTTTCCAAACATTTCATGCTTGGGTAA
63 TCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAA
* * * * *
5941 TCATATCATTTGGTCTAAATAGTTTGTCATTTTGTAGACAACTTTTTGTCTTTGAAGTAAAAACA
128 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* *
6006 TATTCACGAGAGAATTGTTTCTTT
193 TATTCACGTGAGAATTGTTTCTCT
* * * *
6030 GTTGTTTCTTGGACGAACTTTCGAACTTGTCAAAATCTTATTGGTTCTTTTATAACTTCGGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * * *
6095 TTAAAGTATTCATGGTGATCCGTTCCTTCAAGAAAATTTTC-AAACATTCCATGCTCGAGAAATC
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAG-CAATTTTCTAAACATTCCATGCTCGGGAAATC
* * *
6159 TTATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAACAACTTTTGGTCTTTGAATTAAAAATTT
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAACTTTTGGTCTTTGAATTAAAAACTT
* *
6224 ATTCATGTTAGAATTGTTTCTCT
194 ATTCACGTGAGAATTGTTTCTCT
* * * * * ** * **
6247 CTTGATTCTTGG-CTGACCTTTCGAACTTGTCAAACTGTTAGTAATTC-TTTATTTACTTCAATT
1 CTTGGTTCTTGGAC-GAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTA-TAACTTCGGTT
* * * * * * * * *
6310 TCATAAAGTTTTCAAGGCTATCCATTCCTTCAAGCAATTTTCCAAACGTTCCGTGCTTGGGAAAT
64 CCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAAT
* * * *
6375 CGCATTATTTGGTCTAAATAGTTTGTCATTTTGTAAATAATTTTTGGTCTTTGAATTAAAAACTT
129 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * *
6440 ATTTACATGAGAACTGTTTCTCC
194 ATTCACGTGAGAATTGTTTCTCT
* ** *** * *** * *
6463 CTTGCTT-TTAGGA-GTTCTTTTATAAC---T-AAAGT-TCT-TT-AAACTATTCA-AGACAATC
1 CTTGGTTCTT-GGACGAAC-TTCCGAACTTGTCAAACTCT-TATTGGTTCT-TTTATA-AC-TTC
** * * * ** * * * * * *
6518 AATTCCTTCGAGCAATTTTTCAA-AC-ATTTAATGCTCCG-G-AA--ATCGT-ATCATT---TGG
60 GGTTCCTT--A--AAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTC-TAAACATTCCATGC
** * * * * * * *** * *
6573 T--ATAAATTGTTTGTTATTT--TGTAAACAACTTTTGGTC-TTTAAACAAAAAACTTATTCG-C
120 TCGGGAAATCG--TATCATTTGGTCTAAA-TA-GTTT-GTCATTT-TGTAAACAACTT-TTGGTC
** *** * ** *
6632 GTGAGAATT-ATTTCTCTCTTGGTTCTTGATGAACTTCGAACTTGTCAAACTCTT
178 -TTTGAATTAAAAACT-TATT--CACGTGA-GAA-TT-G---TT-T----CTC-T
* * ** * * * * * * ** * *
6686 ATTGGTTGTTTTA-TAACTT-C-AA-TTCCTTAAATTATTCA-AGG--C-AATCT-A-TTCCG-T
1 CTTGGTTCTTGGACGAACTTCCGAACTT-GTCAAACTCTT-ATTGGTTCTTTTATAACTTCGGTT
**** * * * * ** * * *
6740 CGAGCAATTTTTCGAA--C-ATTCCA-TCC-TC-AGGAA--ATCGCATCATT---TGGTC--TAA
64 CCTTAAAGTATTC-AAGGCGA-TCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAA
* ***
6792 ATAGTTTATCATATT-G--TAAACCCTTT-TCATCTTTG-----AA----------TT--A--AA
127 ATCG--TATCAT-TTGGTCTAAATAGTTTGTCAT-TTTGTAAACAACTTTTGGTCTTTGAATTAA
* *
6834 ATA-TTATTTACGTGAGAATTGTTTCTCT
188 AAACTTATTCACGTGAGAATTGTTTCTCT
* * * * * * * * * * *
6862 CTGGGTTCTTAGAAGAACATT-TGAACTTTTTAAACTTTTA-CGAGATCTTTTATAACTCCAGTT
1 CTTGGTTCTTGGACGAAC-TTCCGAACTTGTCAAACTCTTATTG-GTTCTTTTATAACTTCGGTT
* * ** * *
6925 CCTTAAAGTATTCAAGACGATCCATCCCTTCG-GACAATTTTCCGAGCATTCCATGCTCGAGAAA
64 CCTTAAAGTATTCAAGGCGATCCATTCCTTCGAG-CAATTTTCTAAACATTCCATGCTCGGGAAA
** * * * * * *
6989 TAATATCGTTTGCTCTAAATAGTTTGTCATTTTGTAAACAACTATTGTTCTATAAATTAAAAACT
128 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* *
7054 TATTTACGTGAGAATTATTTCTCT
193 TATTCACGTGAGAATTGTTTCTCT
* * * * * *
7078 CTTGGTTCTTGGCCGAACTTCCAAACATGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * * * * * * *
7143 TTCAAGTTTTCAAGACTATTCATTCCTTCGAGAAATTTT-TCAAACATTCCAAGCTCGAGAACTT
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCT-AAACATTCCATGCTCGGGAAATC
* * * * *
7207 GCATCATTTGATCTAAATAGTTTGTCATTTTGTACACAACCTTTT-GTGTTTGAATTAAAAATTT
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTT
* * *
7271 ATTTACGTGAAAATTGTTTCTCA
194 ATTCACGTGAGAATTGTTTCTCT
* * * * *
7294 CTTGGTTCTTAGAAGAACTTCCGAACTTGTCAAACTTTTA-CGAGTTCTTTTATAACTTCAGTTC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTG-GTTCTTTTATAACTTCGGTTC
* * * * * * * ***
7358 CTTTAAGTGAACTTC----CGA-AC-TT--GTC-AG-ACTTTTTTGAACTTTCCATGCTTAAGAA
65 CTTAAAGT--A-TTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAA
** * * * * *
7413 ATCAAATCATTTGGTCTTAATAGTTTTTCATTTTGTAAACAACTTTT--T-TATG---TGAGAA-
127 ATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * **
7471 TTGTCTCTC-T---CCTTG-TTCT-T
192 TTAT-TCACGTGAGAATTGTTTCTCT
** ** * * * * * * **
7491 AGAT-GAACTT--CCAAACTTGTCAAACATT-T-ACAA-----A-T---TCTTTTAAAAATTTAG
1 -CTTGGTTCTTGGACGAACTT-CCGAAC-TTGTCA-AACTCTTATTGGTTCTTTTATAACTTCGG
* * * * * * ** *
7542 TTCCATAAAGTATTCAAGACGATCAATT-CTGTCGAACAACTTTCCAAACATTCCATTTTAGGGA
62 TTCCTTAAAGTATTCAAGGCGATCCATTCCT-TCGAGCAATTTTCTAAACATTCCATGCTCGGGA
* * * * * *
7606 AATCATATTATTTGGTCTAATTATTTTGTCATTTTGTAAAGAACTTTTGGTCTTTGAATTAAGAA
126 AATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * * *
7671 -TTGGTTTACGTAAGAAGTGTTTCTCC
191 CTT-ATTCACGTGAGAATTGTTTCTCT
* * * * *
7697 CTTGGTTCATGGACGAACTTTCG-ACATTGTCAAACTTTTA-CGAGTTCTTTTATAACTTTGGTT
1 CTTGGTTCTTGGACGAACTTCCGAAC-TTGTCAAACTCTTATTG-GTTCTTTTATAACTTCGGTT
* * * * *
7760 CCTTAAAGTATTCACGACGATCCATTTCTTCGAGCAATTTTCCT-AATATTCCATGCTCGAGAAA
64 CCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTT-CTAAACATTCCATGCTCGGGAAA
*** * * * *
7824 TAACATCATTTGGTCTAAATAGTTTCTCATATTGTAAACAACTTTTGGTCTTTAAATTAAAAACC
128 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * *
7889 TATTTATGTTAGAATTGTTTCTCT
193 TATTCACGTGAGAATTGTTTCTCT
* * * * *
7913 ACTT-GTTCTT-GACTGAACTTTC-ATACTTGTTAAACTTTTA-TGAGTTCTTTTATAACTCCGA
1 -CTTGGTTCTTGGAC-GAACTTCCGA-ACTTGTCAAACTCTTATTG-GTTCTTTTATAACTTCGG
* ** * * *
7974 TTCCTTAAAGTA-TCAAGGCGATCCATTACTTCTTGTAATTTTCCT-AATATTCCATGCTCGAGA
62 TTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTT-CTAAACATTCCATGCTCGGGA
* * * * * * * **
8037 AATAGCATTATTCGGTCTAAATAATTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATGAAAGG
126 AATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
*
8102 CTTATTTACAG-GAGAATTGTTTCTCT
191 CTTATTCAC-GTGAGAATTGTTTCTCT
* * * * * * *
8128 CTTGGTTCTTGGGA-AAACTTCCGAAGTTGTCAAACT-TTCA-CGAGTTTTTTTATTACTTTGAT
1 CTTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACTCTT-ATTG-GTTCTTTTATAACTTCGGT
* ** * * * *
8190 TCCCTAAAGTATTCAAGATGATCTACTCCTTCGATCAATTTTCCAAACATTCCATGCTCGGGAAA
63 TCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAA
*** * * * *
8255 TAACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAATAGCTTTTCGTCTTTGAATTAAAAA-T
128 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
*
8319 ATAATT-ACGTGAGAA-T-TCTCTCT
193 -T-ATTCACGTGAGAATTGTTTCTCT
* * * * *
8342 CTTGG-TCTTGTGATGAACTTCTGAACTTGTCAAATTCTTATTGGTTATTTTATAACTTCAGTTC
1 CTTGGTTCTTG-GACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTC
* * * * *
8406 CGTAACGTATTCAAGGCGATCCATTCCTTCGAGCAATTTT-TCAAATAGTCCATGCTCAGGAAAT
65 CTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCT-AAACATTCCATGCTCGGGAAAT
* * *
8470 CATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTCTGAATTAAAAGCTT
129 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* *
8535 ATTAACG-GTAGAATTTTTTCTCT
194 ATTCACGTG-AGAATTGTTTCTCT
* * * *
8558 CTTGGTTCTTGGACGAACTTCTGAACTTGTAAAACTCTTATTGATTCTTTTATAACTTCAGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * *
8623 TTAAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATATTTC-GAATATTCCATGCTCCGAAAATC
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAAT-TTTCTAAACATTCCATGCTCGGGAAATC
* *
8687 TTATCA-TTGAGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTGGTCTTTGAATTAAAAATTT
130 GTATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
8750 ATTCACGTGAGAATTGTTTCTCT
194 ATTCACGTGAGAATTGTTTCTCT
* * * * * * * * *
8773 CTCGATTATT----GATCTTTCGAACTTGTCAAACTTTTA-CGAGTTC-TTTATTTACTTCAGTT
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTG-GTTCTTTTA-TAACTTCGGTT
* * * * *
8832 TCGTAAAGTTTTCAAGGCGATCCATTCCTTCGAGCAGTTTT-TCGAACATTCCATGCTCGGGAAA
64 CCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCT-AAACATTCCATGCTCGGGAAA
* * * * *
8896 CTC-CATCATTTGGTCTAAATAGTTTTTCATTCTGTAAATC-GCTTTTTGTCTTTGAATTAAAAA
128 -TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAAA
* * * *
8959 CATATTTACGTCG-GAATTTTTTCTTT
191 CTTATTCACGT-GAGAATTGTTTCTCT
* ** *
8985 CTTGGTT-TTGGGATGAACTTTAGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCAGTTC
1 CTTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTC
* * *
9049 CTTAAAGTATTCAAGGTGATCCATTCCTTCGAGCAATTTT-TCGAACAGTCCATGCTCGGGAAAT
65 CTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCT-AAACATTCCATGCTCGGGAAAT
*
9113 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAGAAC-ACTTTTGGTCTTTGAATTAAAAGCT
129 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGAATTAAAAACT
*
9177 TATTCACATGAGAATTGTTTCTCT
193 TATTCACGTGAGAATTGTTTCTCT
* *
9201 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTTGGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* ** * * ** *
9266 TTAAAGTATTCACA-GCGATCCGTTCCTTCGATTAATTTTTTGAACATTTTATGCTCAGGAAATC
66 TTAAAGTATTCA-AGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATC
* * ** *
9330 TTATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCAGTGAATTAAAAATTTA
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* *
9395 TTCACGTGAGAATTATTTTTCT
195 TTCACGTGAGAATTGTTTCTCT
* * * * **
9417 CTTGGTTCTTGGACGATCTTCCAAACCTGTCAAACT-TTTTTGAGTTCATTATT-T-ACTTTAGT
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTG-GTTC-TT-TTATAACTTCGGT
* * * ** *
9479 TTCATAAAGTTTTCAAGGTAATCCATTCCTTCGAGCAATTTT-AAGAACATTCCATGCTCGGGAA
63 TCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTA-AACATTCCATGCTCGGGAA
*
9543 ATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
127 ATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
9608 TTATTCACGTGAGAA-T-TTTCTCT
192 TTATTCACGTGAGAATTGTTTCTCT
** * *
9631 CTTTATTTTTGGAC-AGTCTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACATT-GGTT
1 CTTGGTTCTTGGACGA-ACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAAC-TTCGGTT
* ** * * *
9694 CCTTAAAATACACAAGGCGATCCATTCCTTCGACCAATTTTCTGAACGA-TCCATGCTCGAGAAA
64 CCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAAC-ATTCCATGCTCGGGAAA
* * * **
9758 TCGCATCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAGCTTTTAATCTTTGAATTAAAAACT
128 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
*
9823 TATTTACGTGAGAATTGTTTCTCT
193 TATTCACGTGAGAATTGTTTCTCT
* * * * * ** * *
9847 CTTTG-TCTTGGGAAGATCTTCTGAACCTACCAAACTCTTTTTGGTTCTTTTATAACTTCGGCTC
1 CTTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTC
* * * * * * * *
9911 CTTAAACTATTCAAGGCGATTCGTTCCTTCGAGCAATTTT-AAGAACATTCCTTGCCCCGAAAAT
65 CTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTA-AACATTCCATGCTCGGGAAAT
* * * * *
9975 CATATCATTTGGTCTAAATTGTTTGTCATTTTGTAAAAAACTTTTGGTTTTTGAATTAAATACTT
129 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* *
10040 ATTCACATGAGAATTGTTTTTCT
194 ATTCACGTGAGAATTGTTTCTCT
* * * * * * *
10063 CTTGGTTGTTGGATGAACTTCTGAGCTTGTCAAACTCTGATTGGTTCCTTTATAACTTCGATTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * *
10128 TTAAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATTTTCCAAACATTTCATGCTCAGGAAATAG
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATCG
* * *
10193 TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTGTTTGAGTTAAGAACTTAT
131 TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * *
10258 TTACGTAAGAATTATTTCTCT
196 TCACGTGAGAATTGTTTCTCT
* ** * * * **
10279 CTTGGTTCTT-GTCGAACTTCAAAACTTGACAAACTTTTA-CGAGTTCTTTTATAACTTTAGTTC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTG-GTTCTTTTATAACTTCGGTTC
* * * * * * * *
10342 CTTAAACTTTTCAAGACAATCAATTCCTTTGAGCTATTTTC-GAACATTCCATGCTCGGGAAATC
65 CTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATC
* * * * * *
10406 GTATCATTCGGTCTAAATTGTTTATTATTTTGTAAACAAATTTTGGTCTTTAAATTAAAAACTTA
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
10471 TTCACGTGAGAATTGTTTCTCT
195 TTCACGTGAGAATTGTTTCTCT
* * * * * *
10493 CTTGGTTCTTTGACGAACTTTCGAACTTGTCAAATTGTTATTGGTTCCTTTATAATTTCGGTTCC
1 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * * **
10558 TTAAAGTATTCAAGGCAATCCATTCCTTCAAGCAATTTTTTGAACATTCCATGCTCAAGAAATCG
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATCG
* * * * * **
10623 CATCATTTGGTCTTAATAGTTTATCATTTTGTTAACAAATTTTCATCTTTGAATT---AA---AT
131 TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
10682 T-A--TGAGAATTGTTTCTCT
196 TCACGTGAGAATTGTTTCTCT
* * * ** * **
10700 CTTGGTT-TTGGGATGAACATCCGAACTTGTCAAACTCTTTTTCATTCCTTTATAACTTCAATTC
1 CTTGGTTCTT-GGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTC
* * * * * *
10764 CTTAAAATATTCAAGGCGTTCTATTCCTTCAAGCAATATTCTGAACATT
65 CTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATT
10813 GGATGCTAAG
Statistics
Matches: 5544, Mismatches: 1073, Indels: 617
0.77 0.15 0.09
Matches are distributed among these distances:
176 9 0.00
177 6 0.00
178 4 0.00
179 11 0.00
180 2 0.00
181 2 0.00
182 4 0.00
183 1 0.00
184 8 0.00
185 10 0.00
186 7 0.00
187 28 0.01
188 11 0.00
189 2 0.00
190 5 0.00
191 9 0.00
192 4 0.00
193 4 0.00
194 66 0.01
195 6 0.00
196 24 0.00
197 13 0.00
198 5 0.00
199 3 0.00
200 9 0.00
201 7 0.00
202 103 0.02
203 66 0.01
204 5 0.00
205 15 0.00
206 16 0.00
207 129 0.02
208 27 0.00
209 71 0.01
210 198 0.04
211 130 0.02
212 79 0.01
213 27 0.00
214 532 0.10
215 751 0.14
216 2863 0.52
217 237 0.04
218 5 0.00
219 5 0.00
220 2 0.00
221 1 0.00
222 5 0.00
223 8 0.00
224 8 0.00
225 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTAAACATTCCATGCTCGGGAAATCG
TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
TCACGTGAGAATTGTTTCTCT
Found at i:4702 original size:432 final size:432
Alignment explanation
Indices: 3676--10800 Score: 6331
Period size: 432 Copynumber: 16.7 Consensus size: 432
3666 GTAATTAGTA
* * * * *
3676 CTTGGTT-TTCGGACGAACTTTCGAACATGTCAAACTCTTATTGGTTCTTTTATAACTTTGGTTC
1 CTTGGTTCTT-GGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGATTC
* * ** * * *
3740 CTTGAAGTATTCATGATGATCCATTCCTTCGAGCAATTTTCTGAACATTCCCTGCTCGAGAAATC
65 CTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGGGAAATC
* * ** * * * *
3805 TTATCATGTAATCTAAATAGGTTGTCAATTTGTAAACAACTTTTGGTGTTTGAATTAAAAACCTA
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
3870 GTCACGTGAGAATTGTTTCTTTCATGGTTCTTTGACGAACTTCCGAACTTGTCAAACTTTTATTG
195 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATTG
* * * * *
3935 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCATGGCGATCCA-TTCCTTTGAGTAA-TTTCCT
260 GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGAT-CAGTTCCTTCGAGCAATTTTTC-
* ** * * * * * *
3998 AAACACACCATGCTCGGGAAATAGTATTATTCGGTCTAAATAATTTGTTATTTTGTAAACAAC--
323 GAACATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
* * *
4061 -T--T-TTTGTATTAAAAACTTATTCACGGGATAA-TGTTTTCTCT
388 TTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTG-TTTCTCT
* ** * * *
4102 CTTGGTTCTTAGACAAACTTCCAAACTTGTCAAACTCTTATTGGTTATTTTATAACTTCGGTTCC
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGATTCC
* * ** * * *
4167 TTAAAGTATTCAAGGTGATCCATTCCTTCGAACAATTTTTTGAACATTCCATACTCAGGAAATCT
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGGGAAATCG
* * * * *
4232 TATAATTTAGTCTAAATAGTTTGTCATTCTGTAAACAACTATTGGTCTTTGAATTAAAAATTTAT
131 TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * * ** *
4297 TCACGTCAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTTAAAACTTGTCAAATTTTTATTGG
196 TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATTGG
* ** * * *
4362 TTCTTTAATAACTTTGGTTCTTTAAAGTATTCAAGGCGATCAGTTCCTTTGAGAAATTTTTCGAA
261 TTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCAGTTCCTTCGAGCAATTTTTCGAA
* * * **
4427 CATTCCATGTTCGAGAAATAATTTCATTTGGTCTAAATAGTTTTTCATTTTGTAAACAACTTTCC
326 CATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * *
4492 ATCTTTGAATTAAAAGCTTATTTACGTGAGAATTGTTTCTCT
391 GTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* *
4534 CTTGGTT-TTGGGATGAACTTCCAAACTTGTCAAACTCTTTTTGGTTCTTTTATAACTTCGATTC
1 CTTGGTTCTT-GGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGATTC
* * *
4598 CTTAAAGTACTT-AA-GCTGATCCGTTCCTTCGAGCAATTTTAAGAACATTCCTTGCTCGGGAAA
65 CTTAAAGTA-TTCAAGGC-GATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGGGAAA
* *
4661 TCGTATCATTTGGTTTAAATTGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
128 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* *
4726 TATTCACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTCTTAT
193 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTAT
* * * * * *
4791 TGGTTCTTTTCTAACTTCTGTTCCTTAAAGTATTCATGGTGATCCGTTCCTTTGAGCAA-TTTTC
258 TGGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCAGTTCCTTCGAGCAATTTTTC
* * * ** *
4855 TGGACATTCGATGCTCGGGAAATTGTATCATTTGGTC-AAA-A-----T-A----GT-TACAACT
323 -GAACATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * *
4907 TTTGGTCTTTGAATTAAAAAGTTATTTACATAAGAATTGTTTCTCT
387 TTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* * * *** * *
4953 CTTGGTTCTT-GCTGAACTTCCAAACTTGTCAAACTTTTACAAGTTATTTTATCACTT-GAGTTC
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGA-TTC
* * *** * *
5016 CTAAAAGCATTCAAAATGATCCATTCCTTCAAGAAATTTTTC-GAACATTCCATGCTCGGGAAAT
65 CTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAA-TTTTCAGAACATTCCATGCTCGGGAAAT
** * * * * * * *
5080 CACATAATATGGTGTCAATAGTTTTTCATATTGTAAACAACTTTT-GTCTTTTAATTAAAAACTT
129 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * ** * *
5144 ATTTATGTGAGAACTAATTCTTTACAT-GTTCTT-GACCGAACTTTCGAACTTGTCAAACTTTTA
194 ATTTACGTGAGAATTGTTTCTCT-CTTGGTTCTTGGA-CGAACTTTCGAACTTGTCAAACTTTTA
* * * *** ** *
5207 -CGAGTTCTTTAATAACTTTAGTTTAATAAAGTATTCAAGGCGATCCCTTCCTTTGAGCAATTTT
257 TTG-GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCAGTTCCTTCGAGCAATTTT
* * * * * * *
5271 ACGATCATTCCATGCTCGATAAATTGA-ATCATTTGGTCTTAATAGTTTTTCATTTTGGAAACAG
321 TCGAACATTCCATGCTCGAGAAA-TAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA-
* *
5335 A-TTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTATTTCTAT
384 ACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* * * * * *
5383 CTTGGTTCTTGGACGAACTTCCAAACTTTTCAAACTCTTATTGGTTCATTAATTACTTC-AGTTC
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGA-TTC
* * * * * * * *
5447 CTTATAGTATTCAAGGTGATTCGTTCTTTCGAGCAACTTTTCA-AAAAGTCCATGCTCAGGAAAT
65 CTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAA-TTTTCAGAACATTCCATGCTCGGGAAAT
* * *
5511 CATATCATTTGGTCTAAATAGTTTGTCATTTTGTAGACAACTTTTGGTCTTTGAATTAAAAGCTT
129 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* *
5576 ATTCT-CGTGAGAATTGTTTCTCTGTTGGTTCTTGGACGAAC-TTCTGAACTTGTCAAACTCTTA
194 ATT-TACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTA
* * * *
5639 TTGGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCATGGCGATCCGTTCCTTCAAGCAATTTTT
257 TTGGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCAGTTCCTTCGAGCAATTTTT
* * * ** *
5704 TGAACATTCCATGCTAGGGAAATCTTATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACT
322 CGAACATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACT
* * * * *
5769 TTAGGTATTTGAATTAAAAATTTATTCATGTGAGAATTGTTTCTGT
387 TTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
** * * * *
5815 CTTGGTTCTTGG-CCAATCATCCGAACTTGTCAAACTTTTATTAGTTC-TTTATTTACTT-GAGT
1 CTTGGTTCTTGGATGAA-CTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTA-TAACTTCGA-T
* * * * * *
5877 TTCATAAAGTTTTCAAGGCGATCCA-TCCTTCGAGCAATTTTCCA-AACATTTCATGCTTGGGTA
63 TCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTT-CAGAACATTCCATGCTCGGGAA
* * * *
5940 ATCATATCATTTGGTCTAAATAGTTTGTCATTTTGTAGACAACTTTTTGTCTTTGAAGTAAAAAC
127 ATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * * * * * * *
6005 ATATTCACGAGAGAATTGTTTCTTTGTTGTTTCTTGGACGAACTTTCGAACTTGTCAAAATCTTA
192 TTATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTA
* * * * * * *
6070 TTGGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCATGGTGATCCGTTCCTTCAAGAAAATTTT
257 TTGGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCAGTTCCTTCGAGCAATTTTT
* ** *
6135 CAAACATTCCATGCTCGAGAAATCTTATCATTTAGTCTAAATAGTTTGTCATTTTGTAAAACAAC
322 CGAACATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAAC
* * *
6200 TTTTGGTCTTTGAATTAAAAATTTATTCATGTTAGAATTGTTTCTCT
386 TTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* * * * * * ** * * *
6247 CTTGATTCTTGGCTGACCTTTCGAACTTGTCAAACTGTTAGTAATTC-TTTATTTACTTCAATTT
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTA-TAACTTCGATTC
* * * * * * *
6311 CATAAAGTTTTCAAGGCTATCCATTCCTTCAAGCAATTTTCCA-AACGTTCCGTGCTTGGGAAAT
65 CTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTT-CAGAACATTCCATGCTCGGGAAAT
* * * *
6375 CGCATTATTTGGTCTAAATAGTTTGTCATTTTGTAAATAATTTTTGGTCTTTGAATTAAAAACTT
129 CGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
* * * * *
6440 ATTTACATGAGAACTGTTTCTCCCTTGCTT-TTAGGA-G----TT----CTT-TTATAAC---TA
194 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTTCGAACTTGTCA-AACTTTTA
** * * ** *
6491 -AAGTTC-TTTA-AAC-T-A-TT-C---AAGACAATCAATTC---CT------TCGAGCAATTTT
257 TTGGTTCTTTTATAACTTCAGTTCCTTAAAG-TATTCAAGGCGATCAGTTCCTTCGAGCAATTTT
* ** ** * * *
6537 TCAAACATTTAATGCTCCG-GAAATCGTATCATTTGGTATAAATTGTTTGTTATTTTGTAAACAA
321 TCGAACATTCCATGCT-CGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* ** * *
6601 CTTTTGGTCTTTAAACAAAAAACTTATTCGCGTGAGAATTATTTCTCT
385 CTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* *
6649 CTTGGTTCTT-GATGAACTT-CGAACTTGTCAAACTCTTATTGGTTGTTTTATAACTTCAATTCC
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGATTCC
* * * * * *
6712 TTAAATTATTCAAGGCAATCTATTCCGTCGAGCAATTTTTC-GAACATTCCATCCTCAGGAAATC
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAA-TTTTCAGAACATTCCATGCTCGGGAAATC
* * * * **
6776 GCATCATTTGGTCTAAATAGTTTATCATATTGTAAAC-CCTTTTCATCTTTGAATTAAAATA-TT
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA-ACTT
* * * * *
6839 ATTTACGTGAGAATTGTTTCTCTCTGGGTTCTTAGAAGAACATTT-GAACTTTTTAAACTTTTA-
194 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAAC-TTTCGAACTTGTCAAACTTTTAT
* * * * *
6902 CGAGATCTTTTATAACTCCAGTTCCTTAAAGTATTCAAGACGATCCA-TCCCTTCG-GACAATTT
258 TG-GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGAT-CAGTTCCTTCGAG-CAATTT
* * * *
6965 TCCGAGCATTCCATGCTCGAGAAATAATATCGTTTGCTCTAAATAGTTTGTCATTTTGTAAACAA
320 TTCGAACATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA
* * * * * *
7030 CTATTGTTCTATAAATTAAAAACTTATTTACGTGAGAATTATTTCTCT
385 CTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
** * * * * * *
7078 CTTGGTTCTTGGCCGAACTTCCAAACATGTCAAACTTTTACTAGTTCTTTTATAACTTCGGTTCC
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGATTCC
* * * * * * * * * *
7143 TTCAAGTTTTCAAGACTATTCATTCCTTCGAGAAATTTTTCA-AACATTCCAAGCTCGAGAACTT
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAA-TTTTCAGAACATTCCATGCTCGGGAAATC
* * * * *
7207 GCATCATTTGATCTAAATAGTTTGTCATTTTGTACACAACCTTTT-GTGTTTGAATTAAAAATTT
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAA-CTTTTGGTCTTTGAATTAAAAACTT
* * * * * *
7271 ATTTACGTGAAAATTGTTTCTCACTTGGTTCTTAGAAGAACTTCCGAACTTGTCAAACTTTTA-C
194 ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATT
* * * *
7335 GAGTTCTTTTATAACTTCAGTTCCTTTAAGTGAACTTC----CGA--ACTT--GTC-AG-ACTTT
259 G-GTTCTTTTATAACTTCAGTTCCTTAAAGT--A-TTCAAGGCGATCAGTTCCTTCGAGCAATTT
* * ** * *
7390 TTTGAACTTTCCATGCTTAAGAAATCAA-ATCATTTGGTCTTAATAGTTTTTCATTTTGTAAACA
320 TTCGAACATTCCATGCTCGAGAAAT-AATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACA
*
7454 A--------C-TT---TT------TTA-T---GTGAGAATTGTCTCTCT
384 ACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* * **** * * *
7481 CCTT-GTTCTTAGATGAACTTCCAAACTTGTCAAACAT-TTACAAATTCTTTTAAAAATT-TAGT
1 -CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAAC-TCTTATTGGTTCTTTTATAACTTCGA-T
* * * * * ** *
7543 TCCATAAAGTATTCAAGACGATCAATT-CTGTCGAACAACTTTCCA-AACATTCCATTTTAGGGA
63 TCCTTAAAGTATTCAAGGCGATCCATTCCT-TCGAGCAA-TTTTCAGAACATTCCATGCTCGGGA
* * * * * *
7606 AATCATATTATTTGGTCTAATTATTTTGTCATTTTGTAAAGAACTTTTGGTCTTTGAATTAAGAA
126 AATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAA
* * * * *
7671 -TTGGTTTACGTAAGAAGTGTTTCTCCCTTGGTTCATGGACGAACTTTCG-ACATTGTCAAACTT
191 CTT-ATTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAAC-TTGTCAAACTT
* ** * * *
7734 TTA-CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCACGACGATCCA-TTTCTTCGAGCAA
254 TTATTG-GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGAT-CAGTTCCTTCGAGCAA
* * * * * *
7797 TTTTCCTAATATTCCATGCTCGAGAAATAACATCATTTGGTCTAAATAGTTTCTCATATTGTAAA
317 TTTTTCGAACATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * * *
7862 CAACTTTTGGTCTTTAAATTAAAAACCTATTTATGTTAGAATTGTTTCTCT
382 CAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* * * *
7913 ACTT-GTTCTT-GACTGAACTTTC-ATACTTGTTAAACTTTTA-TGAGTTCTTTTATAACTCCGA
1 -CTTGGTTCTTGGA-TGAACTTCCGA-ACTTGTCAAACTCTTATTG-GTTCTTTTATAACTTCGA
* ** * ** * *
7974 TTCCTTAAAGTA-TCAAGGCGATCCATTACTTCTTGTAATTTTCCTAATATTCCATGCTCGAGAA
62 TTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGGGAA
* * * * * * * **
8038 ATAGCATTATTCGGTCTAAATAATTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATGAAAGGC
127 ATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* * *
8103 TTATTTACAG-GAGAATTGTTTCTCTCTTGGTTCTTGGGA-AAACTTCCGAAGTTGTCAAACTTT
192 TTATTTAC-GTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTTCGAACTTGTCAAACTTT
* * * * * * ** * *
8166 CA-CGAGTTTTTTTATTACTT-TGATTCCCTAAAGTATTCAAGATGATCTA-CTCCTTCGATCAA
255 TATTG-GTTCTTTTATAACTTCAG-TTCCTTAAAGTATTCAAGGCGATC-AGTTCCTTCGAGCAA
* * * * *
8228 TTTTCCAAACATTCCATGCTCGGGAAATAACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAA
317 TTTTTCGAACATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA
* * * *
8293 TAGCTTTTCGTCTTTGAATTAAAAA-TATAATT-ACGTGAGAA-T-TCTCTCT
382 CAACTTTTGGTCTTTGAATTAAAAACT-T-ATTCACGTGAGAATTGTTTCTCT
* * *
8342 CTTGG-TCTTGTGATGAACTTCTGAACTTGTCAAATTCTTATTGGTTATTTTATAACTTC-AGTT
1 CTTGGTTCTTG-GATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGA-TT
* * * * *
8405 CCGTAACGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTCA-AATAGTCCATGCTCAGGAAA
64 CCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAA-TTTTCAGAACATTCCATGCTCGGGAAA
* * *
8469 TCATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTCTGAATTAAAAGCT
128 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * *
8534 TATTAACG-GTAGAATTTTTTCTCTCTTGGTTCTTGGACGAAC-TTCTGAACTTGTAAAACTCTT
193 TATTTACGTG-AGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTT
* * *
8597 ATTGATTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATATT
256 ATTGGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCAGTTCCTTCGAGCAATTTT
* **
8662 TCGAATATTCCATGCTCCGA-AAATCTTATCA-TTGAGTCTAAATAGTTTGTCATTTTGTAAACA
321 TCGAACATTCCATGCT-CGAGAAATAATATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAACA
*
8725 AC-TTTGGTCTTTGAATTAAAAATTTATTCACGTGAGAATTGTTTCTCT
384 ACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* * * * * * *
8773 CTCGATTATT-GAT---CTTTCGAACTTGTCAAACTTTTA-CGAGTTC-TTTATTTACTTC-AGT
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTG-GTTCTTTTA-TAACTTCGA-T
* * * *
8831 TTCGTAAAGTTTTCAAGGCGATCCATTCCTTCGAGCAGTTTTTC-GAACATTCCATGCTCGGGAA
63 TCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCA-ATTTTCAGAACATTCCATGCTCGGGAA
* * * * *
8895 ACTC-CATCATTTGGTCTAAATAGTTTTTCATTCTGTAAATC-GCTTTTTGTCTTTGAATTAAAA
127 A-TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGGTCTTTGAATTAAAA
* * * * *
8958 ACATATTTACGTCG-GAATTTTTTCTTTCTTGGTT-TTGGGATGAACTTTAGAACTTGTCAAACT
190 ACTTATTTACGT-GAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTTCGAACTTGTCAAACT
* *
9021 CTTATTGGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGTGATCCA-TTCCTTCGAGCAA
253 TTTATTGGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGAT-CAGTTCCTTCGAGCAA
* * **
9085 TTTTTCGAACAGTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAGA
317 TTTTTCGAACATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTA-A
* *
9150 AC-ACTTTTGGTCTTTGAATTAAAAGCTTATTCACATGAGAATTGTTTCTCT
381 ACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* *
9201 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTTGGTTCC
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGATTCC
* ** ** ** *
9266 TTAAAGTATTCACA-GCGATCCGTTCCTTCGATTAATTTTTTGAACATTTTATGCTCAGGAAATC
66 TTAAAGTATTCA-AGGCGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGGGAAATC
* * ** *
9330 TTATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCAGTGAATTAAAAATTTA
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * * *
9395 TTCACGTGAGAATTATTTTTCTCTTGGTTCTTGGACGATCTTCCAAACCTGTCAAACTTTT-TTG
195 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATTG
* * * * **
9459 AGTTCATTATT-T-ACTTTAGTTTCATAAAGTTTTCAAGGTAATCCA-TTCCTTCGAGCAATTTT
260 -GTTC-TT-TTATAACTTCAGTTCCTTAAAGTATTCAAGGCGAT-CAGTTCCTTCGAGCAATTTT
** * ***
9521 AAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
321 TCGAACATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAAC
9586 TTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAA-T-TTTCTCT
386 TTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
** * * * *
9631 CTTTATTTTTGGA-CAGTCTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACATT-GGTT
1 CTTGGTTCTTGGATGA-ACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAAC-TTCGATT
* ** * * *
9694 CCTTAAAATACACAAGGCGATCCATTCCTTCGACCAATTTTCTGAACGA-TCCATGCTCGAGAAA
64 CCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCAGAAC-ATTCCATGCTCGGGAAA
* * * **
9758 TCGCATCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAGCTTTTAATCTTTGAATTAAAAACT
128 TCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
* * * * **
9823 TATTTACGTGAGAATTGTTTCTCTCTTTG-TCTTGGGAAGATC-TTCTGAACCTACCAAACTCTT
193 TATTTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTTC-GAACTTGTCAAACT-TT
* * *
9886 T-TTGGTTCTTTTATAACTTCGGCTCCTTAAACTATTCAAGGCGATTC-GTTCCTTCGAGCAATT
255 TATTGGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGA-TCAGTTCCTTCGAGCAATT
** * * * * *
9949 TTAAGAACATTCCTTGCCCCGA-AAATCATATCATTTGGTCTAAATTGTTTGTCATTTTGTAAAA
319 TTTCGAACATTCCATG-CTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAC
* * * *
10013 AACTTTTGGTTTTTGAATTAAATACTTATTCACATGAGAATTGTTTTTCT
383 AACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* * * * *
10063 CTTGGTTGTTGGATGAACTTCTGAGCTTGTCAAACTCTGATTGGTTCCTTTATAACTTCGATTCC
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGATTCC
* * * *
10128 TTAAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATTTTCCA-AACATTTCATGCTCAGGAAATA
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTT-CAGAACATTCCATGCTCGGGAAATC
* * *
10192 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTGTTTGAGTTAAGAACTTA
130 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* * * * * *
10257 TTTACGTAAGAATTATTTCTCTCTTGGTTCTT-GTCGAAC-TTCAAAACTTGACAAACTTTTA-C
195 TTTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTTTTATT
* * * * * * * *
10319 GAGTTCTTTTATAACTTTAGTTCCTTAAACTTTTCAAGACAATCAATTCCTTTGAGCTA-TTTTC
259 G-GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCAGTTCCTTCGAGCAATTTTTC
* ** * * * * *
10383 GAACATTCCATGCTCGGGAAATCGTATCATTCGGTCTAAATTGTTTATTATTTTGTAAACAAATT
323 GAACATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTT
*
10448 TTGGTCTTTAAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
388 TTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* * * * * * * *
10493 CTTGGTTCTTTGACGAACTTTCGAACTTGTCAAATTGTTATTGGTTCCTTTATAATTTCGGTTCC
1 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGATTCC
* * ** **
10558 TTAAAGTATTCAAGGCAATCCATTCCTTCAAGCAATTTTTTGAACATTCCATGCTCAAGAAATCG
66 TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGGGAAATCG
* * * * * **
10623 CATCATTTGGTCTTAATAGTTTATCATTTTGTTAACAAATTTTCATCTTTGAATT---AA---A-
131 TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
* * *
10681 TTA--TGAGAATTGTTTCTCTCTTGGTT-TTGGGATGAACATCCGAACTTGTCAAACTCTTT-TT
196 TTACGTGAGAATTGTTTCTCTCTTGGTTCTT-GGACGAACTTTCGAACTTGTCAAACT-TTTATT
** * * * * *
10742 CATTCCTTTATAACTTCAATTCCTTAAAATATTCAAGGCGTTCTA-TTCCTTCAAGCAAT
259 GGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATC-AGTTCCTTCGAGCAAT
10801 ATTCTGAACA
Statistics
Matches: 5519, Mismatches: 925, Indels: 513
0.79 0.13 0.07
Matches are distributed among these distances:
399 47 0.01
400 118 0.02
401 16 0.00
402 66 0.01
403 289 0.05
404 9 0.00
405 2 0.00
406 3 0.00
407 4 0.00
408 8 0.00
409 8 0.00
410 56 0.01
411 5 0.00
412 7 0.00
413 6 0.00
414 4 0.00
415 2 0.00
416 5 0.00
417 149 0.03
418 138 0.03
419 63 0.01
420 16 0.00
421 26 0.00
422 62 0.01
423 11 0.00
424 9 0.00
425 60 0.01
426 331 0.06
427 308 0.06
428 83 0.02
429 220 0.04
430 913 0.17
431 912 0.17
432 1408 0.26
433 149 0.03
434 3 0.00
435 3 0.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (432 bp):
CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGATTCC
TTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCAGAACATTCCATGCTCGGGAAATCG
TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
TTACGTGAGAATTGTTTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTTTTATTGG
TTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCAGTTCCTTCGAGCAATTTTTCGAA
CATTCCATGCTCGAGAAATAATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
GTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
Found at i:9837 original size:646 final size:645
Alignment explanation
Indices: 7464--10800 Score: 3325
Period size: 646 Copynumber: 5.2 Consensus size: 645
7454 ACTTTTTTAT
* * * * * *
7464 GTGAGAATTGTCTCTCTCCTT-GTTCTTAGATGAACTTCCAAACTTGTCAAACATTTACAAATTC
1 GTGAGAATTGTTTCTCT-CTTGGTTCTTGGA-GAACTTCCGAACTTGTCAAACTTTTACGAGTTC
** * * * * *
7528 TTT-TAAAAATTTAG-TTCCATAAAGTATTCAAGACGATCAATT-CTGTCGAACAACTTTCCAAA
64 TTTATATTACTTTAGATTCCATAAAGTATTCAAGGCGATCCATTCCT-TCGAGCAATTTTCCAAA
** * * * * * *
7590 CATTCCATTTTAGGGAAATCATATTATTTGGTCTAATTATTTTGTCATTTTGTAAAGAACTTTTG
128 CATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * * * ** *
7655 GTCTTTGAATTAAGAA-TTGGTTTACGTAAGAAGTGTTTCTCCCTTGGTTCATGGACGAACTTTC
193 GTCTTTGAATTAAAAACTT-ATTTACGTGAGAA-TTTTTCTCTCTTGGTTTTTGGA--AGC-TTC
* * * * *
7719 -G-ACATTGTCAAACTTTTA-CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCACGACGAT
253 AGAAC-TTGTCAAACTCTTATTG-GTTCTTTTATAAC-TTAGTTCCTTAAAGTATTCAAGGCGAT
* * * ***
7781 CCATTTCTTCGAGCAATTTTCCT-AATATTCCATGCTCGAGAAATAACATCATTTGGTCTAAATA
315 CCATTCCTTCGAGCAATTTT-CTGAACAGTCCATGCTCGAGAAATCGTATCATTTGGTCTAAATA
* * * * * * *
7845 GTTTCTCATATTGTAAACAACTTTTGGTCTTTAAATTAAAAACCTATTTATGTTAGAATTGTTTC
379 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTC
* * * *
7910 TCTACTT-GTTCTT-GACTGAACTTTC-ATACTTGTTAAACTTTTA-TGAGTTCTTTTATAACTC
444 TCT-CTTGGTTCTTGGAC-GAACTTCCGA-ACTTGTCAAACTCTTATTG-GTTCTTTTATAACTT
* * * ** * * *
7971 CGATTCCTTAAAGTA-TCAAGGCGATCCATTACTTCTTGTAATTTTCCT-AATATTCCATGCTC-
505 CGGTTCCTTAAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATTTT-TTGAACATTCCATGCTCA
* * * * * * *
8033 GAGAAATAGCATTATTCGGTCTAAATAATTTGTCATTTTGTAAACAAATTTTGGTCTTTGAATGA
569 G-GAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTA
** *
8098 AAGGCTTATTTAC
633 AAAACTTATTCAC
* * *
8111 AG-GAGAATTGTTTCTCTCTTGGTTCTTGGGAAAACTTCCGAAGTTGTCAAACTTTCACGAGTT-
1 -GTGAGAATTGTTTCTCTCTTGGTTCTT-GGAGAACTTCCGAACTTGTCAAACTTTTACGAGTTC
* * ** * * *
8174 TTTTTATTACTTT-GATTCCCTAAAGTATTCAAGATGATCTACTCCTTCGATCAATTTTCCAAAC
64 TTTATATTACTTTAGATTCCATAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCCAAAC
* * * * *
8238 ATTCCATGCTCGGGAAATAACATCATTTAGTCTAAATAGTTTGTCATTTTGTAAATAGCTTTTCG
129 ATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * *
8303 TCTTTGAATTAAAAA-TATAATTACGTGAGAA-TTCTCTCTCTTGGTCTTGTGATGAA-CTTCTG
194 TCTTTGAATTAAAAACT-TATTTACGTGAGAATTTTTCTCTCTTGGT-TTTTG--GAAGCTTCAG
* * * *
8365 AACTTGTCAAATTCTTATTGGTTATTTTATAACTTCAGTTCCGTAACGTATTCAAGGCGATCCAT
255 AACTTGTCAAACTCTTATTGGTTCTTTTATAACTT-AGTTCCTTAAAGTATTCAAGGCGATCCAT
* * *
8430 TCCTTCGAGCAATTTT-TCAAATAGTCCATGCTC-AGGAAATCATATCATTTGGTCTAAATAGTT
319 TCCTTCGAGCAATTTTCT-GAACAGTCCATGCTCGA-GAAATCGTATCATTTGGTCTAAATAGTT
* * * *
8493 TGTCATTTTGTAAACAACTTTTGGTCTCTGAATTAAAAGCTTATTAACG-GTAGAATTTTTTCTC
382 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTG-AGAATTGTTTCTC
* * * *
8557 TCTTGGTTCTTGGACGAACTTCTGAACTTGTAAAACTCTTATTGATTCTTTTATAACTTCAGTTC
446 TCTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTC
* * * * *
8622 CTTAAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATATTTCGAATATTCCATGCTCCGAAAATC
511 CTTAAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATTTTTTGAACATTCCATGCTCAGGAAATC
* *
8687 TTATCA-TTGAGTCTAAATAGTTTGTCATTTTGTAAACAAC-TTTGGTCTTTGAATTAAAAATTT
576 GTATCATTTG-GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
8750 ATTCAC
640 ATTCAC
* * * * *
8756 GTGAGAATTGTTTCTCTCTCGATTATT---GATCTTTCGAACTTGTCAAACTTTTACGAGTTCTT
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGAGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
* * * * * * *
8818 TAT-TTACTTCAG-TTTCGTAAAGTTTTCAAGGCGATCCATTCCTTCGAGCAGTTTTTCGAACAT
66 TATATTACTTTAGATTCCATAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCCAAACAT
* * * *
8881 TCCATGCTCGGGAAACTC-CATCATTTGGTCTAAATAGTTTTTCATTCTGTAAATC-GCTTTTTG
131 TCCATGCTCGGGAAA-TCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTTGG
* * * * *
8944 TCTTTGAATTAAAAACATATTTACGTCG-GAATTTTTTCTTTCTTGGTTTTGGGATGAACTTTAG
194 TCTTTGAATTAAAAACTTATTTACGT-GAGAA-TTTTTCTCTCTTGGTTTTTGGA--AGCTTCAG
*
9008 AACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGTGATCCAT
255 AACTTGTCAAACTCTTATTGGTTCTTTTATAACTT-AGTTCCTTAAAGTATTCAAGGCGATCCAT
*
9073 TCCTTCGAGCAATTTT-TCGAACAGTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATAGTTT
319 TCCTTCGAGCAATTTTCT-GAACAGTCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTT
* *
9137 GTCATTTTGTAGAAC-ACTTTTGGTCTTTGAATTAAAAGCTTATTCACATGAGAATTGTTTCTCT
383 GTCATTTTGTA-AACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* *
9201 CTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTTGGTTCC
447 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
** **
9266 TTAAAGTATTCACA-GCGATCCGTTCCTTCGATTAATTTTTTGAACATTTTATGCTCAGGAAATC
512 TTAAAGTATTCA-AGGCGATCCGTTCCTTCGAGCAATTTTTTGAACATTCCATGCTCAGGAAATC
* * ** *
9330 TTATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCAGTGAATTAAAAATTTA
576 GTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
9395 TTCAC
641 TTCAC
* * * * * ** *
9400 GTGAGAATTATTTTTCTCTTGGTTCTTGGACGATCTTCCAAACCTGTCAAACTTTTTTGAGTTCA
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGA-GAACTTCCGAACTTGTCAAACTTTTACGAGTTCT
* * ** *
9465 TTAT-TTACTTTAG-TTTCATAAAGTTTTCAAGGTAATCCATTCCTTCGAGCAATTTT-AAGAAC
65 TTATATTACTTTAGATTCCATAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCCA-AAC
*
9527 ATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
129 ATTCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* ** *
9592 TCTTTGAATTAAAAACTTATTCACGTGAGAA-TTTTCTCTCTTTATTTTTGGACAGTCTTCCGAA
194 TCTTTGAATTAAAAACTTATTTACGTGAGAATTTTTCTCTCTTGGTTTTTGGA-AG-CTTCAGAA
* * **
9656 CTTGTCAAACTCTTATTGGTTCTTTTATAACATTGGTTCCTTAAAATACACAAGGCGATCCATTC
257 CTTGTCAAACTCTTATTGGTTCTTTTATAAC-TTAGTTCCTTAAAGTATTCAAGGCGATCCATTC
* * *
9721 CTTCGACCAATTTTCTGAAC-GATCCATGCTCGAGAAATCGCATCATTTGGCCTAAATAGTTTGT
321 CTTCGAGCAATTTTCTGAACAG-TCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGT
* ** *
9785 CATTTTGTAAACAGCTTTTAATCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTT
385 CATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCTCTT
* * * * * ** * *
9850 TG-TCTTGGGAAGATCTTCTGAACCTACCAAACTCTTTTTGGTTCTTTTATAACTTCGGCTCCTT
450 GGTTCTT-GGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCCTT
* * ** * * * * *
9914 AAACTATTCAAGGCGATTCGTTCCTTCGAGCAATTTTAAGAACATTCCTTGCCCCGAAAATCATA
514 AAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATTTTTTGAACATTCCATGCTCAGGAAATCGTA
* * * *
9979 TCATTTGGTCTAAATTGTTTGTCATTTTGTAAAAAACTTTTGGTTTTTGAATTAAATACTTATTC
579 TCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTC
10044 AC
644 AC
* * * * * * * *
10046 ATGAGAATTGTTTTTCTCTTGGTTGTTGGATGAACTTCTGAGCTTGTCAAACTCTGATTG-GTTC
1 GTGAGAATTGTTTCTCTCTTGGTTCTTGGA-GAACTTCCGAACTTGTCAAACTTTTA-CGAGTT-
* * *
10110 CTTTATA--AC-TTCGATTCCTTAAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATTTTCCAAA
63 CTTTATATTACTTTAGATTCCATAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCCAAA
* * *
10172 CATTTCATGCTCAGGAAAT-AGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
128 CATTCCATGCTCGGGAAATCA-CATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* * * * *
10236 GGTGTTTGAGTTAAGAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTTGTCGAA-CTTCA
192 GGTCTTTGAATTAAAAACTTATTTACGTGAGAATT-TTTCTCTCTTGGTT-TT-TGGAAGCTTCA
* * * * * * * * *
10300 AAACTTGACAAACTTTTA-CGAGTTCTTTTATAACTTTAGTTCCTTAAACTTTTCAAGACAATCA
254 GAACTTGTCAAACTCTTATTG-GTTCTTTTATAAC-TTAGTTCCTTAAAGTATTCAAGGCGATCC
* * * * * *
10364 ATTCCTTTGAGCTATTTTC-GAACATTCCATGCTCGGGAAATCGTATCATTCGGTCTAAATTGTT
317 ATTCCTTCGAGCAATTTTCTGAACAGTCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTT
* * * *
10428 TATTATTTTGTAAACAAATTTTGGTCTTTAAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
382 TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCT
* * * * * *
10493 CTTGGTTCTTTGACGAACTTTCGAACTTGTCAAATTGTTATTGGTTCCTTTATAATTTCGGTTCC
447 CTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCC
* * * *
10558 TTAAAGTATTCAAGGCAATCCATTCCTTCAAGCAATTTTTTGAACATTCCATGCTCAAGAAATCG
512 TTAAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATTTTTTGAACATTCCATGCTCAGGAAATCG
* * * * * **
10623 CATCATTTGGTCTTAATAGTTTATCATTTTGTTAACAAATTTTCATCTTTGAATT---AA---AT
577 TATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
10682 T-A-
642 TCAC
* *
10684 -TGAGAATTGTTTCTCTCTTGGTT-TTGGGATGAACATCCGAACTTGTCAAACTCTTTTTC-A-T
1 GTGAGAATTGTTTCTCTCTTGGTTCTT-GGA-GAACTTCCGAACTTGTCAAA--CTTTTACGAGT
* * * * * *
10745 TCCTTTATA--ACTTCA-ATTCCTTAAAATATTCAAGGCGTTCTATTCCTTCAAGCAAT
62 T-CTTTATATTACTTTAGATTCCATAAAGTATTCAAGGCGATCCATTCCTTCGAGCAAT
10801 ATTCTGAACA
Statistics
Matches: 2260, Mismatches: 353, Indels: 163
0.81 0.13 0.06
Matches are distributed among these distances:
636 2 0.00
637 91 0.04
638 1 0.00
639 4 0.00
640 5 0.00
641 153 0.07
642 11 0.00
643 339 0.15
644 66 0.03
645 282 0.12
646 856 0.38
647 259 0.11
648 185 0.08
649 3 0.00
650 3 0.00
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (645 bp):
GTGAGAATTGTTTCTCTCTTGGTTCTTGGAGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTT
TATATTACTTTAGATTCCATAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCCAAACAT
TCCATGCTCGGGAAATCACATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
TTTGAATTAAAAACTTATTTACGTGAGAATTTTTCTCTCTTGGTTTTTGGAAGCTTCAGAACTTG
TCAAACTCTTATTGGTTCTTTTATAACTTAGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCG
AGCAATTTTCTGAACAGTCCATGCTCGAGAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTT
GTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCACGTGAGAATTGTTTCTCTCTTGGTTCT
TGGACGAACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCCTTAAAGTAT
TCAAGGCGATCCGTTCCTTCGAGCAATTTTTTGAACATTCCATGCTCAGGAAATCGTATCATTTG
GTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCAC
Found at i:10001 original size:430 final size:431
Alignment explanation
Indices: 7464--10812 Score: 3207
Period size: 430 Copynumber: 7.8 Consensus size: 431
7454 ACTTTTTTAT
* * * * * ****
7464 GTGAGAATTGTCTCTCTCCTT-GTTCTTAGATGAACTTCCAAACTTGTCAAACAT-TTACAAATT
1 GTGAGAATTGTTTCTCT-CTTGGTTTTTGGAAGAACTTCCGAACTTGTCAAAC-TCTTATTGGTT
* * ** * * * * * **
7527 CTTTTAAAAATTTAGTTCCATAAAGTATTCAAGACGATCAATT-CTGTCGAACAACTTTCCAAAC
64 CTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCGATCCATTCCT-TCGAGCAATTTTCTGAAC
* * ** * * * *
7591 ATTCCAT-TTTAGGGAAATCATATTATTTGGTCTAATTATTTTGTCATTTTGTAAAGAACTTTTG
128 ATTCCATGCTCA--GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTG
* * * * * * * *
7655 GTCTTTGAATTAAGAA-TTGGTTTACGTAAGAAGTGTTTCTCCCTTGGTTCAT-GGACGAACTT-
191 GTCTTTGAATTAAAAACTT-ATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGGAAGAACTTC
** * * *
7717 TCG-ACATTGTCAAACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCACGACGAT
255 T-GAAC-TTGTCAAACTTTTTTGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGGCGAT
* * * * * *
7781 CCATTTCTTCGAGCAATTTTCCTAATATTCCATGCTCGAGAAATAACATCATTTGGTCTAAATAG
318 CCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAG
* * * * * *
7846 TTTCTCATATTGTAAACAACTTTTGGTCTTTAAATTAAAAACCTATTTAT
382 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCAC
* * * * * *
7896 GTTAGAATTGTTTCTCTACTT-GTTCTT-GACTGAACTTTC-ATACTTGTTAAACTTTTA-TGAG
1 GTGAGAATTGTTTCTCT-CTTGGTTTTTGGA-AGAACTTCCGA-ACTTGTCAAACTCTTATTG-G
* * * ** *
7957 TTCTTTTATAACTCCGATTCCTTAAAGTA-TCAAGGCGATCCATTACTTCTTGTAATTTTCCT-A
62 TTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTT-CTGA
* * * * * *
8020 ATATTCCATGCTCGAGAAATAGCATTATTCGGTCTAAATAATTTGTCATTTTGTAAACAAATTTT
126 ACATTCCATGCTC-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTT
* ** *
8085 GGTCTTTGAATGAAAGGCTTATTTACAG-GAGAATTGTTTCTCTCTTGGTTCTTGGGAA-AACTT
190 GGTCTTTGAATTAAAAACTTATTTAC-GTGAGAATTATTTCTCTCTTGGTTCTTGGGAAGAACTT
* * *** * * * **
8148 CCGAAGTTGTCAAACTTTCACGAGTTTTTTTATTACTTT-GATTCCCTAAAGTATTCAAGATGAT
254 CTGAACTTGTCAAACTTTTTTGAGTTCTTTTATAACTTTAG-TTCCTTAAAGTATTCAAGGCGAT
* * * * * * *
8212 CTACTCCTTCGATCAATTTTCCAAACATTCCATGCTCGGGAAATAACATCATTTAGTCTAAATAG
318 CCATTCCTTCGAGCAATTTT-CGAACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAG
* * *
8277 TTTGTCATTTTGTAAATAGCTTTTCGTCTTTGAATTAAAAA-TATAATT-AC
382 TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT-T-ATTCAC
* * * * * *
8327 GTGAGAA-T-TCTCTCTCTTGG-TCTTGTGATGAACTTCTGAACTTGTCAAATTCTTATTGGTTA
1 GTGAGAATTGTTTCTCTCTTGGTTTTTG-GAAGAACTTCCGAACTTGTCAAACTCTTATTGGTTC
* * * *
8389 TTTTATAACTTCAGTTCCGTAACGTATTCAAGGCGATCCATTCCTTCGAGCAATTTT-TCAA-AT
65 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACAT
**
8452 AGTCCATGCTCAGGAAATCATATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
130 --TCCATGCTCA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * * * *
8517 TCTCTGAATTAAAAGCTTATTAACG-GTAGAATTTTTTCTCTCTTGGTTCTT-GGACGAACTTCT
192 TCTTTGAATTAAAAACTTATTTACGTG-AGAATTATTTCTCTCTTGGTTCTTGGGAAGAACTTCT
* * *
8580 GAACTTGTAAAACTCTTATTGA-TTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGCGATCC
256 GAACTTGTCAAACT-TTTTTGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGGCGATCC
* * * * *
8644 GTTCCTTCGAGCAATATTTCGAATATTCCATGCTCCGAAAATCTTATCA-TTGAGTCTAAATAGT
320 ATTCCTTCGAGCAAT-TTTCGAACATTCCATGCTCGGGAAATCATATCATTTG-GTCTAAATAGT
*
8708 TTGTCATTTTGTAAACAAC-TTTGGTCTTTGAATTAAAAATTTATTCAC
383 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCAC
* * * * * * *
8756 GTGAGAATTGTTTCTCTCTCGATTATT----GATCTTTCGAACTTGTCAAACTTTTA-CGAGTTC
1 GTGAGAATTGTTTCTCTCTTGGTTTTTGGAAGAACTTCCGAACTTGTCAAACTCTTATTG-GTTC
* * * * * *
8816 -TTTATTTACTTCAGTTTCGTAAAGTTTTCAAGGCGATCCATTCCTTCGAGCAGTTTT-TCGAAC
65 TTTTA-TAACTTCGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCT-GAAC
* * * *
8879 ATTCCATGCTCGGGAAACTC-CATCATTTGGTCTAAATAGTTTTTCATTCTGTAAATC-GCTTTT
128 ATTCCATGCTC-AGAAA-TCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-CAACTTTT
* * * * *
8942 TGTCTTTGAATTAAAAACATATTTACGTCG-GAATTTTTTCTTTCTTGGTT-TTGGGATGAACTT
190 GGTCTTTGAATTAAAAACTTATTTACGT-GAGAATTATTTCTCTCTTGGTTCTTGGGAAGAACTT
* * *
9005 -TAGAACTTGTCAAACTCTTATTG-GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGGTGA
254 CT-GAACTTGTCAAACT-TTTTTGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGGCGA
* *
9068 TCCATTCCTTCGAGCAATTTTTCGAACAGTCCATGCTCGGGAAATCGTATCATTTGGTCTAAATA
317 TCCATTCCTTCGAGCAA-TTTTCGAACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATA
*
9133 GTTTGTCATTTTGTAGAAC-ACTTTTGGTCTTTGAATTAAAAGCTTATTCAC
381 GTTTGTCATTTTGTA-AACAACTTTTGGTCTTTGAATTAAAAACTTATTCAC
* * *
9184 ATGAGAATTGTTTCTCTCTTGGTTCTTGGATGAACTTCCGAACTTGTCAAACTCTTATTGGTTCT
1 GTGAGAATTGTTTCTCTCTTGGTTTTTGGAAGAACTTCCGAACTTGTCAAACTCTTATTGGTTCT
* * ** *
9249 TTTATAACTTTGGTTCCTTAAAGTATTCACA-GCGATCCGTTCCTTCGATTAATTTTTTGAACAT
66 TTTATAACTTCGGTTCCTTAAAGTATTCA-AGGCGATCCATTCCTTCGAGCAATTTTCTGAACAT
** ** *
9313 TTTATGCTCAGGAAATCTTATCATTTAGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
130 TCCATGCTCA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
** * * * * * **
9378 AGTGAATTAAAAATTTATTCACGTGAGAATTATTTTTCTCTTGGTTCTT-GGACGATCTTCCAAA
194 TTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGGAAGAACTTCTGAA
* * * * **
9442 CCTGTCAAACTTTTTTGAGTTCATTATT-T-ACTTTAGTTTCATAAAGTTTTCAAGGTAATCCAT
259 CTTGTCAAACTTTTTTGAGTTC-TT-TTATAACTTTAGTTCCTTAAAGTATTCAAGGCGATCCAT
* **
9505 TCCTTCGAGCAATTTTAAGAACATTCCATGCTCGGGAAATCGCATCATTTGGTCTAAATAGTTTG
322 TCCTTCGAGCAATTTT-CGAACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAGTTTG
9570 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCAC
386 TCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCAC
** *
9616 GTGAGAA-T-TTTCTCTCTTTATTTTTGGACAG-TCTTCCGAACTTGTCAAACTCTTATTGGTTC
1 GTGAGAATTGTTTCTCTCTTGGTTTTTGGA-AGAACTTCCGAACTTGTCAAACTCTTATTGGTTC
* ** *
9678 TTTTATAACATT-GGTTCCTTAAAATACACAAGGCGATCCATTCCTTCGACCAATTTTCTGAACG
65 TTTTATAAC-TTCGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAAC-
* * **
9742 A-TCCATGCTCGAGAAATCGCATCATTTGGCCTAAATAGTTTGTCATTTTGTAAACAGCTTTTAA
128 ATTCCATGCTC-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGG
* * *
9806 TCTTTGAATTAAAAACTTATTTACGTGAGAATTGTTTCTCTCTTTG-TCTTGGGAAGATCTTCTG
192 TCTTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGGAAGAACTTCTG
* ** ** * * * *
9870 AACCTACCAAACTCTTTTTG-GTTCTTTTATAACTTCGGCTCCTTAAACTATTCAAGGCGATTCG
257 AACTTGTCAAACT-TTTTTGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGGCGATCCA
* * * * * *
9934 TTCCTTCGAGCAATTTTAAGAACATTCCTTGCCCCGAAAATCATATCATTTGGTCTAAATTGTTT
321 TTCCTTCGAGCAATTTT-CGAACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAGTTT
* * *
9999 GTCATTTTGTAAAAAACTTTTGGTTTTTGAATTAAATACTTATTCAC
385 GTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCAC
* * * * * * * *
10046 ATGAGAATTGTTTTTCTCTTGGTTGTTGGATGAACTTCTGAGCTTGTCAAACTCTGATTGGTTCC
1 GTGAGAATTGTTTCTCTCTTGGTTTTTGGAAGAACTTCCGAACTTGTCAAACTCTTATTGGTTCT
* * **
10111 TTTATAACTTCGATTCCTTAAAGTATTCAAGGCGATCCGTTCCTTCGAGCAATTTTCCAAACATT
66 TTTATAACTTCGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACATT
* * * *
10176 TCATGCTCAGGAAATAGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTGT
131 CCATGCTCA-GAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCT
* * * ** **
10241 TTGAGTTAAGAACTTATTTACGTAAGAATTATTTCTCTCTTGGTTCTT--GTCGAACTTCAAAAC
195 TTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGGAAGAACTTCTGAAC
* ** * * * * *
10304 TTGACAAACTTTTACGAGTTCTTTTATAACTTTAGTTCCTTAAACTTTTCAAGACAATCAATTCC
260 TTGTCAAACTTTTTTGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGGCGATCCATTCC
* * * * * * *
10369 TTTGAGCTATTTTCGAACATTCCATGCTCGGGAAATCGTATCATTCGGTCTAAATTGTTTATTAT
325 TTCGAGCAATTTTCGAACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTCAT
* *
10434 TTTGTAAACAAATTTTGGTCTTTAAATTAAAAACTTATTCAC
390 TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCAC
* * * *
10476 GTGAGAATTGTTTCTCTCTTGGTTCTTT-GACGAACTTTCGAACTTGTCAAATTGTTATTGGTTC
1 GTGAGAATTGTTTCTCTCTTGGTT-TTTGGAAGAACTTCCGAACTTGTCAAACTCTTATTGGTTC
* * * * *
10540 CTTTATAATTTCGGTTCCTTAAAGTATTCAAGGCAATCCATTCCTTCAAGCAATTTTTTGAACAT
65 TTTTATAACTTCGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACAT
* * * * **
10605 TCCATGCTCAAGAAATCGCATCATTTGGTCTTAATAGTTTATCATTTTGTTAACAAATTTTCATC
130 TCCATGCTC-AGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTC
* * * *
10670 TTTGAATT---AA---A-TTA--TGAGAATTGTTTCTCTCTTGGTT-TTGGGATGAACATCCGAA
194 TTTGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGGAAGAACTTCTGAA
* * * * * * *
10725 CTTGTCAAACTCTTTTTCA-TTCCTTTATAACTTCAATTCCTTAAAATATTCAAGGCGTTCTATT
259 CTTGTCAAACT-TTTTTGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGGCGATCCATT
* *
10789 CCTTCAAGCAATATTCTGAACATT
323 CCTTCGAGCAATTTTC-GAACATT
10813 GGATGCTAAG
Statistics
Matches: 2433, Mismatches: 389, Indels: 199
0.81 0.13 0.07
Matches are distributed among these distances:
420 2 0.00
421 21 0.01
422 67 0.03
423 14 0.01
424 1 0.00
426 8 0.00
427 302 0.12
428 77 0.03
429 101 0.04
430 842 0.35
431 391 0.16
432 588 0.24
433 17 0.01
434 2 0.00
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (431 bp):
GTGAGAATTGTTTCTCTCTTGGTTTTTGGAAGAACTTCCGAACTTGTCAAACTCTTATTGGTTCT
TTTATAACTTCGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACATT
CCATGCTCAGAAATCGCATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTT
TGAATTAAAAACTTATTTACGTGAGAATTATTTCTCTCTTGGTTCTTGGGAAGAACTTCTGAACT
TGTCAAACTTTTTTGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGGCGATCCATTCCT
TCGAGCAATTTTCGAACATTCCATGCTCGGGAAATCATATCATTTGGTCTAAATAGTTTGTCATT
TTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCAC
Found at i:11708 original size:216 final size:216
Alignment explanation
Indices: 11321--12728 Score: 1476
Period size: 216 Copynumber: 6.6 Consensus size: 216
11311 GTCAAACAAG
** * * * * *
11321 TTCTCTCTTATTTCTTGGTCGAACATCCAAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTT
1 TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTC
* * * * * * *
11386 GGTTCCTTAAAATATTCAAGGCGATTCGTTCTTTCGAGCAATTGTTCAAACATTCCATGCTCAAG
66 GGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGG
* **
11451 AAATCTTATCATTTAATCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAAATAAAA
131 AAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAAATAAAA
*
11516 ACTTATTCACGTGAGAATTAT
196 ACTTATTCACATGAGAATTAT
* *
11537 TTTTCTCTTGGTTCTTGGACAAAC-TTCAGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTT
1 TTCTCTCTTGGTTCTTGGACGAACTTTC-GAACTTGTCAAACTCTTATTGGTTCTTTTATAACTT
11601 CGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAG
65 CGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAG
* * * * *
11666 GAAATAGTATCATTTGGTCTAAATAGTTTTTCATTCTGTAAAAAAACTTTTGGTTTTTGAATTAA
130 GAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGT-AAAAAACTTTTGGTCTTTGAAATAA
* * *
11731 AAAGTTATTTACAT-ATGAATTGT
194 AAACTTATTCACATGA-GAATTAT
* ** * *
11754 TTCTCTCTTGGTTCTT-GTCGAACTTTAAAACTTGTCAAACTTTTA-CGAGTTCTTTTATAACTT
1 TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTCTTATTG-GTTCTTTTATAACTT
** * ** * *
11817 TAGTTCCTTAAACTATTCAA-GATAGTCAATTCCTTCGAGCAA-TTTTCTGAACATGCCATGCTC
65 CGGTTCCTTAAAGTATTCAAGGCGA-TCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGCTC
* * * * *
11880 -GAGAAATTGTATCATTTGGTCTAAATTGTTTGTTATTTTGTAAACAACTTTTGGTCTTCG-AAT
128 AG-GAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAAAT
* * *
11943 CAAAAACTTATTCACGTGAGATTTGT
192 -AAAAACTTATTCACATGAGAATTAT
* * * * * *
11969 TTCTCTGTTGGTT-TTAGGATGTACTTTCGAACCTATCAAGCTCTTATTGGTTCTTTTATAACTT
1 TTCTCTCTTGGTTCTT-GGACGAACTTTCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTT
* * * * * *
12033 CGGTTCCTTAAAGTATTCAAGACGATCCGTTCTTTCAAACAATTTTTCGAACATTCCATGCTCCG
65 CGGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAG
* * * * *
12098 AAAATCGTATCTTTTGGTCTAAATAGTTTGTCATATTGTAAAGAAACTTTTGGTTTTTGAATTAA
130 GAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAA-AAACTTTTGGTCTTTGAAATAA
12163 AAACTTATTCACATGAGAATTAAT
194 AAACTTATTCACATGAGAATT-AT
* * * * * * *
12187 TT-TTTCTTGATTCTTAGACAAACTTTCGAACTTGTCATACTCTTATTTGTTCTTTTATACCTTC
1 TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTC
* * * * * *
12251 AGTTCCTTAAAGAATTAAAGGTGAT-CAGTTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGG
66 GGTTCCTTAAAGTATTCAAGGCGATCCA-TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAG
* * *
12315 GAAATAGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAACAATTTTTGGTCTTT-AAATTAA
130 GAAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAAA-TAA
*
12379 AAACTTATTCACGTGAGAATTAT
194 AAACTTATTCACATGAGAATTAT
* * * * * *
12402 TTCTCTCTTGGTTTTTTGACGAACTTTCGAACTTTTTAAACTCTTATTGGTTCTTTCATAACTTT
1 TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTC
* * * * *
12467 GGTTCCTTAAAGTATTCAAGGCGATCCATTTCTCCAAGCAATTTTTCGAATATTCGATGCTCAGG
66 GGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGG
* ** * * ** *
12532 AAATCGCATCA--T--T-T---TAGTTCATCATTTTGTAAACAGCTTTTCATCTTTGAATTAAAA
131 AAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAAATAAAA
* * * *
12589 TCTTATTTACATGGGAATTGT
196 ACTTATTCACATGAGAATTAT
* * ** * *
12610 TTCTCTCTTGGTT-TTGGGATGAAC-TTCTTAACTTGTCAAGTTCTTATTTGTTCCTTTATAACT
1 TTCTCTCTTGGTTCTT-GGACGAACTTTC-GAACTTGTCAAACTCTTATTGGTTCTTTTATAACT
* * * *
12673 TCAGTTCCTTAAAGTATTCAAGGC-ATTTCGTTCCTTTGAGCAATTTTTCGAACATT
64 TCGGTTCCTTAAAGTATTCAAGGCGA-TCCATTCCTTCGAGCAATTTTTCGAACATT
12729 GGATGCTCGG
Statistics
Matches: 985, Mismatches: 179, Indels: 64
0.80 0.15 0.05
Matches are distributed among these distances:
207 6 0.01
208 140 0.14
209 2 0.00
211 1 0.00
212 1 0.00
214 5 0.01
215 64 0.06
216 523 0.53
217 236 0.24
218 7 0.01
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (216 bp):
TTCTCTCTTGGTTCTTGGACGAACTTTCGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTC
GGTTCCTTAAAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGG
AAATCGTATCATTTGGTCTAAATAGTTTGTCATTTTGTAAAAAACTTTTGGTCTTTGAAATAAAA
ACTTATTCACATGAGAATTAT
Found at i:12801 original size:649 final size:646
Alignment explanation
Indices: 11356--12728 Score: 1573
Period size: 649 Copynumber: 2.1 Consensus size: 646
11346 TCCAAACTTG
* * ** * * *
11356 TCAAACTCTTATTGGTTCTTTTATAACTTTGGTTCCTTAAAATATTCAAGGCGATTCGTTCTTTC
1 TCAAGCTCTTATTGGTTCCTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCGTTCTTTC
* * * * * * * **
11421 GAGCAATTGTTCAAACATTCCATGCT-CAAGAAATCTTATCATT-T-AATCTAAATAGTTTGTCA
66 AAACAATTTTTCGAACATTCCATGCTCCGA-AAATCGTATC-TTATGAA-CTAAAGAAATTGTCA
* * *
11483 TTTTGTAAA-AAACTTTTGGTCTTTGAAATAAAAACTTATTCACGTGAGAATTATTTTTCTCTTG
128 TATTGTAAAGAAACTTTTGGTTTTTGAAATAAAAACTTATTCACATGAGAATTATTTTTCTCTTG
* * *
11547 GTTCTTGGACAAACTTCAGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCCTTAA
193 ATTCTTAGACAAACTTCAGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCAGTTCCTTAA
* *
11612 AGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATAGTATC
258 AGAATTAAAGGCGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATAGTATC
* * * * *
11677 ATTTGGTCTAAATAGTTTTTCATTCTGTAAAAAAACTTTTGGTTTTTGAATTAAAAAGTTATTTA
323 ATTTGGTCTAAATAGTTTGTCATTCTGTAAAAAAACTTTTGGTCTTTAAATTAAAAACTTATTCA
* * *
11742 CATATGAATTGTTTCTCTCTTGGTTCTTGTCGAACTTTAAAACTTGTCAAACTTTTACGAGTTCT
388 CATATGAATTATTTCTCTCTTGGTTCTTGACGAACTTTAAAACTTGTCAAACTCTTACGAGTTCT
* * * *
11807 TTTATAACTTTAGTTCCTTAAACTATTCAAGATAGTCAATTCCTTCGAGCAATTTTCTGAACATG
453 TTCATAACTTTAGTTCCTTAAACTATTCAAGAGAGTCAATTCCTCCAAGCAATTTTCTGAACATG
* * ** * **
11872 CCATGCTCGAGAAATTGTATCATTTGGTCTAAATTGTTTGTTATTTTGTAAACAACTTTTGGTCT
518 CCATGCTCGAGAAATCGCATCATTT-GTCT-AA-TGTTCATCATTTTGTAAACAACTTTTCATCT
* * * *
11937 TCGAATCAAAAACTTATTCACGTGAGATTTGTTTCTCTGTTGGTTTTAGGATGTACTTTCGAACC
580 TCGAATCAAAAACTTATTCACATGAGAATTGTTTCTCTCTTGGTTTTAGGATGAACTTTCGAACC
12002 TA
645 TA
* *
12004 TCAAGCTCTTATTGGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGACGATCCGTTCTTTC
1 TCAAGCTCTTATTGGTTCCTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCGTTCTTTC
* ** * **
12069 AAACAATTTTTCGAACATTCCATGCTCCGAAAATCGTATCTTTTGGTCTAAATAGTTTGTCATAT
66 AAACAATTTTTCGAACATTCCATGCTCCGAAAATCGTATCTTATGAACTAAAGAAATTGTCATAT
*
12134 TGTAAAGAAACTTTTGGTTTTTGAATTAAAAACTTATTCACATGAGAATTAATTTTT-TCTTGAT
131 TGTAAAGAAACTTTTGGTTTTTGAAATAAAAACTTATTCACATGAGAATT-ATTTTTCTCTTGAT
* * *
12198 TCTTAGACAAACTTTC-GAACTTGTCATACTCTTATTTGTTCTTTTATACCTTCAGTTCCTTAAA
195 TCTTAGACAAAC-TTCAGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCAGTTCCTTAAA
* * *
12262 GAATTAAAGGTGAT-CAGTTCCTTCGAGCAATTTTTTGAACATTCCATGCTCGGGAAATAGTATC
259 GAATTAAAGGCGATCCA-TTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATAGTATC
* * *
12326 ATTTGGTCTAAATAGTTTGTCATTTTGT-AAACAATTTTTGGTCTTTAAATTAAAAACTTATTCA
323 ATTTGGTCTAAATAGTTTGTCATTCTGTAAAAAAACTTTTGGTCTTTAAATTAAAAACTTATTCA
* * ** * * *
12390 CGTGA-GAATTATTTCTCTCTTGGTTTTTTGACGAACTTTCGAACTTTTTAAACTCTTATTG-GT
388 CAT-ATGAATTATTTCTCTCTTGG-TTCTTGACGAACTTTAAAACTTGTCAAACTCTTA-CGAGT
* * * * *
12453 TCTTTCATAACTTTGGTTCCTTAAAGTATTCAAG-GCGATCCATTTCTCCAAGCAATTTT-TCGA
450 TCTTTCATAACTTTAGTTCCTTAAACTATTCAAGAGAG-TCAATTCCTCCAAGCAATTTTCT-GA
* * * *
12516 ATATTCGATGCTC-AGGAAATCGCATCA-TT-T-T-A-GTTCATCATTTTGTAAACAGCTTTTCA
513 ACATGCCATGCTCGA-GAAATCGCATCATTTGTCTAATGTTCATCATTTTGTAAACAACTTTTCA
* * * * * * *
12575 TCTTTGAATTAAAATCTTATTTACATGGGAATTGTTTCTCTCTTGGTTTTGGGATGAAC-TTCTT
577 TCTTCGAATCAAAAACTTATTCACATGAGAATTGTTTCTCTCTTGGTTTTAGGATGAACTTTC-G
* *
12639 AACTTG
641 AACCTA
* * * *
12645 TCAAGTTCTTATTTGTTCCTTTATAACTTCAGTTCCTTAAAGTATTCAAGGC-ATTTCGTTCCTT
1 TCAAGCTCTTATTGGTTCCTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGA-TCCGTT-CTT
* *
12709 T-GAGCAATTTTTCGAACATT
64 TCAAACAATTTTTCGAACATT
12729 GGATGCTCGG
Statistics
Matches: 622, Mismatches: 87, Indels: 39
0.83 0.12 0.05
Matches are distributed among these distances:
640 4 0.01
641 143 0.23
642 4 0.01
643 1 0.00
645 1 0.00
646 1 0.00
647 2 0.00
648 171 0.27
649 285 0.46
650 10 0.02
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (646 bp):
TCAAGCTCTTATTGGTTCCTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCGTTCTTTC
AAACAATTTTTCGAACATTCCATGCTCCGAAAATCGTATCTTATGAACTAAAGAAATTGTCATAT
TGTAAAGAAACTTTTGGTTTTTGAAATAAAAACTTATTCACATGAGAATTATTTTTCTCTTGATT
CTTAGACAAACTTCAGAACTTGTCAAACTCTTATTGGTTCTTTTATAACTTCAGTTCCTTAAAGA
ATTAAAGGCGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCTCAGGAAATAGTATCATT
TGGTCTAAATAGTTTGTCATTCTGTAAAAAAACTTTTGGTCTTTAAATTAAAAACTTATTCACAT
ATGAATTATTTCTCTCTTGGTTCTTGACGAACTTTAAAACTTGTCAAACTCTTACGAGTTCTTTC
ATAACTTTAGTTCCTTAAACTATTCAAGAGAGTCAATTCCTCCAAGCAATTTTCTGAACATGCCA
TGCTCGAGAAATCGCATCATTTGTCTAATGTTCATCATTTTGTAAACAACTTTTCATCTTCGAAT
CAAAAACTTATTCACATGAGAATTGTTTCTCTCTTGGTTTTAGGATGAACTTTCGAACCTA
Found at i:13368 original size:216 final size:216
Alignment explanation
Indices: 12745--14911 Score: 2283
Period size: 216 Copynumber: 10.0 Consensus size: 216
12735 TCGGGAATGG
* * * * * * **
12745 TCTTGGATGAACTTTCGAAATTGTCATACTTTTA-CGAGTTCTTCTATAACTTTGGTTCCTTAAA
1 TCTTGGAAGAACTTCCGAACTTGTCAAACTTTTATTG-GTTCTTTTATAACTTCAGTTCCTTAAA
* * * * * * * * *
12809 GCATTCATGACGATCCATTCCTTCTAGAAATATTCCT-AATATTCCATGCTCGAGAAATAGCA-C
65 GTATTCAAGGCGATCCATTCCTTCGAGCAAT-TTTCTGAACATTCCATGCTCGGGAAATCGCATC
* * * * *
12872 TATTTGGTCTAAATAGTTAT-TCATTTTATAAATAAATTTTGGCCTTTGAATTAAAGACTTATTT
129 -ATTTGGTCTAAATAGTT-TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* *
12936 ACATGATAATTGTTTCTCTCTTGGT
192 ACGTGAGAATTGTTTCTCTCTTGGT
* * * * * * * * *
12961 TCTTGGGCA-AACTTCCAAAGTTGTCAAAATTTTACTAGTTTGTTTTATTACATTGA-TTCCTTA
1 TCTT-GGAAGAACTTCCGAACTTGTCAAACTTTTA-TTGGTTCTTTTATAAC-TTCAGTTCCTTA
* * * * ** * *
13024 AAGTATTCAAGACAATCTATTCCTTCGAGCAATTTCCCAAACATTCCATGCTCGAGAAATTGCAT
63 AAGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCAT
** * * * *
13089 CATTTGGTCTAAATAGTTTACCTTTTTTTAAACAACTTGT-GTCTTTGATTTAAAAACTTATTTA
128 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
* * *
13153 CGTTAGAATTGTTTCTCTCCTAGT
193 CGTGAGAATTGTTTCTCTCTTGGT
** * * *
13177 TCTTAAAAGAACTTCCGAACATGTCAAAATTTTA-TGAGTTCTTTTATAACTTAAGTTCCTTAAA
1 TCTTGGAAGAACTTCCGAACTTGTCAAACTTTTATTG-GTTCTTTTATAACTTCAGTTCCTTAAA
* * * *
13241 GTATTCAAGACGATCCATTCCTTCGAGCTATTTTTTGAACATTTCATGCTCGGGAAATCGCATCA
65 GTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCA
* * * * * * *
13306 TCTAGTCTAAACAATTTGACATTTTGTAAACAACTTTTGGTCTTTGAATCAAAAACTTATTTACA
130 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
* * *
13371 TGAGAATTTTTTCTCTTTTGTT
195 TGAGAATTGTTTCTCTCTTGGT
** * * * * *
13393 TCTTGGTCGAACATCCGAACTTAT-TAACTGTTT-GTGAGTTCTTTTATAACTTCATTTCCTTAA
1 TCTTGGAAGAACTTCCGAACTTGTCAAACT-TTTATTG-GTTCTTTTATAACTTCAGTTCCTTAA
* * * * * * *
13456 AGTATTCAATGTGATCCAATCCTTCGAGCAATTTTTCT-AACATTCCATGATTGTGAAATTGCAT
64 AGTATTCAAGGCGATCCATTCCTTCGAGCAA-TTTTCTGAACATTCCATGCTCGGGAAATCGCAT
* ** * * *
13520 CATTTGGTCTAAATAGCTTGTCATTTTGTAAACAAGATTTCGTCTATGAATTAATAA-TGTATTT
128 CATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT-TATTT
*
13584 ACGTGAGAATTTTTTCTCTCTTGGT
192 ACGTGAGAATTGTTTCTCTCTTGGT
** * * *** * * * *
13609 TCTTGGTCGATCTTCCGAACTAGTCAAACTTTTACAAGTTC-TTTATTTACTTTAGTTTCATAAA
1 TCTTGGAAGAACTTCCGAACTTGTCAAACTTTTATTGGTTCTTTTA-TAACTTCAGTTCCTTAAA
* ** ** *
13673 GTTTTCAAGGCGATTGATTCCTTCGATTAGTTTTCTGAACATTCCATGCTCGGGAAATCGCATCA
65 GTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCA
* * * * *
13738 TTTGGTATAAAATAGTTTGTCAATTTGAAAATAACTTTTGGTCTTTAAATTAAAAACTTATTTAC
130 TTTGGTCT-AAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
13803 GTGAGAATTGTTTCTCTCTTGGT
194 GTGAGAATTGTTTCTCTCTTGGT
* * * * **
13826 T-TTGGGGAGAACTTCCAAACTTTTCAAACTCTTATTGGTTCTTTTATAACTTTGGTTCCTTAAA
1 TCTT-GGAAGAACTTCCGAACTTGTCAAACTTTTATTGGTTCTTTTATAACTTCAGTTCCTTAAA
* * * * * * *
13890 GTATTCAAGGCAATTCGTTCCTTTGAGTAATTTTCTGAACATTCCATGCTCTGGAAATCGCACCA
65 GTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCA
*
13955 TTTGG-CTTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTTAAAACTTATTTAC
130 TTTGGTC-TAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
*
14019 ATGAGAATTGTTTCTCTCTTGGT
194 GTGAGAATTGTTTCTCTCTTGGT
* * * * * *
14042 TC-GGGACGAACTTCCAAACTCGTCAAACTCTTATTGGTTCTTTTATAACTTCGGTTCCTTAAAG
1 TCTTGGAAGAACTTCCGAACTTGTCAAACTTTTATTGGTTCTTTTATAACTTCAGTTCCTTAAAG
* * * * * * *
14106 TATTCAACGCGATCCATTCCTTCGATCAATTTTC-GAAACATTCTACGCTTGGGAAATCGTATTA
66 TATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTG-AACATTCCATGCTCGGGAAATCGCATCA
* * *
14170 TTTGGTCTAAATGGTTTGTCATTTTGTAAATAACTTTTGGTCTTTGAATTAAAAACTTATTCACG
130 TTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACG
14235 TGAGAATTGTTTCTCTCTTGGT
195 TGAGAATTGTTTCTCTCTTGGT
* * *
14257 TCTTTGACA-AACTTCCGAACTTGTCAAACTCTTATTGGTTCTTTTACAACTTCAGTTCCTTAAA
1 TCTTGGA-AGAACTTCCGAACTTGTCAAACTTTTATTGGTTCTTTTATAACTTCAGTTCCTTAAA
* **
14321 GTATTCAAGGCGATCCATTCTTTCGAGCAATTTT-TCGAACATTCCATGCTCGGGAAATCTTATC
65 GTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCT-GAACATTCCATGCTCGGGAAATCGCATC
** * * *
14385 ATTTAATCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACCTAATTCAC
129 ATTTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTAC
* * *
14450 ATGAGAATTTTTTCTCTCTTGGG
194 GTGAGAATTGTTTCTCTCTTGGT
* * *
14473 TCTTGGATGAACCTCCGAACTTGTCAAACTTTTATTGGTTCTTTTATTACTTCAGTTCCTTAAAG
1 TCTTGGAAGAACTTCCGAACTTGTCAAACTTTTATTGGTTCTTTTATAACTTCAGTTCCTTAAAG
* * * *
14538 TATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACATTTCATGCTCGGGAAATCACGTTAT
66 TATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCAT
* * * * *
14603 TTGGTTTAAATAGTTTGTCATTTTGAAAACATCTTTTCGTCTTTAAATTAAAAACTTATTTACGT
131 TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
*
14668 G-GAAATTGTTTTTCTCTTGGT
196 GAG-AATTGTTTCTCTCTTGGT
* * * * * * *
14689 T-TTGGGACGAACTTTCGAACTTGTCAAACTCTTATTGGTTCTTTTAAAATTTTCGGTTCCGTAA
1 TCTT-GGAAGAACTTCCGAACTTGTCAAACTTTTATTGGTTCTTTTATAA-CTTCAGTTCCTTAA
* ** * * * *
14753 AGTATTCAAGGTGATCTGTTCCTTCGAGCAATTTTC-AAACATTTCATGCTTGGGAAATCGTATC
64 AGTATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATC
* *
14817 CTTTGGTCTAAACT-GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTCA
129 ATTTGGTCTAAA-TAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTA
*
14881 CGTGAGAATTGTTTCTCTCTTGAT
193 CGTGAGAATTGTTTCTCTCTTGGT
14905 TCTTGGA
1 TCTTGGA
14912 CA
Statistics
Matches: 1629, Mismatches: 283, Indels: 78
0.82 0.14 0.04
Matches are distributed among these distances:
214 5 0.00
215 307 0.19
216 980 0.60
217 328 0.20
218 9 0.01
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (216 bp):
TCTTGGAAGAACTTCCGAACTTGTCAAACTTTTATTGGTTCTTTTATAACTTCAGTTCCTTAAAG
TATTCAAGGCGATCCATTCCTTCGAGCAATTTTCTGAACATTCCATGCTCGGGAAATCGCATCAT
TTGGTCTAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGT
GAGAATTGTTTCTCTCTTGGT
Done.