Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009115.1 Kokia drynarioides strain JFW-HI SEQ_123817, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6590
ACGTcount: A:0.35, C:0.20, G:0.13, T:0.32


Found at i:3996 original size:19 final size:19

Alignment explanation


    Indices: 3972--4010  Score: 60
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       3962 TTTAAAATTA

                               
       3972 ATTTTTCAAAAATATTTTT
          1 ATTTTTCAAAAATATTTTT

                   *   *       
       3991 ATTTTTCCAAATTATTTTT
          1 ATTTTTCAAAAATATTTTT

             
       4010 A
          1 A

       4011 ATCAATTTTA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59


Consensus pattern (19 bp):   
ATTTTTCAAAAATATTTTT
Done.