Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000913.1 Kokia drynarioides strain JFW-HI SEQ_112054, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 749

Length: 1249
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35


Found at i:249 original size:98 final size:98

Alignment explanation


    Indices: 80--346  Score: 430
    Period size: 98  Copynumber: 2.7  Consensus size: 98

         70 TATTTAAAAT

                 *                                   *                 *     
         80 CGAGGTAATATTCCTTTATTTCGGGT-TATGAAAATTTGTGTCTTAACTTACTAGGCGCTATTTT
          1 CGAGGCAATATTCCTTTATTTCGGGTCT-TGAAAATTTGTGCCTTAACTTACTAGGCGCGATTTT

                                              
        144 TTCTTCAAACCGAAATAATCGAGTACCCTTAAAC
         65 TTCTTCAAACCGAAATAATCGAGTACCCTTAAAC

                                                            *                
        178 CGAGGCAATATTCCTTTATTTCGGGTCTTGAAAATTTGTGCCTTAACTCACTAGGCGCGATTTTT
          1 CGAGGCAATATTCCTTTATTTCGGGTCTTGAAAATTTGTGCCTTAACTTACTAGGCGCGATTTTT

                       *                     
        243 TCTTCAAACCGGAATAATCGAGTACCCTTAAAC
         66 TCTTCAAACCGAAATAATCGAGTACCCTTAAAC

                          *        *          *                          *   
        276 CGAGGCAATATTCCATTATTTCGAGTCTTGAAAAGTTGTGCCTTAACTTACTAGGCGCGA-CTTT
          1 CGAGGCAATATTCCTTTATTTCGGGTCTTGAAAATTTGTGCCTTAACTTACTAGGCGCGATTTTT

                   
        340 TCTTCAA
         66 TCTTCAA

        347 TCTGGGATAA


Statistics
Matches: 158,  Mismatches: 10, Indels: 3
        0.92            0.06        0.02

Matches are distributed among these distances:
  97   10  0.06
  98  147  0.93
  99    1  0.01

ACGTcount: A:0.27, C:0.21, G:0.17, T:0.36


Consensus pattern (98 bp):   
CGAGGCAATATTCCTTTATTTCGGGTCTTGAAAATTTGTGCCTTAACTTACTAGGCGCGATTTTT
TCTTCAAACCGAAATAATCGAGTACCCTTAAAC
Done.