Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01009132.1 Kokia drynarioides strain JFW-HI SEQ_123836, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3057
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34


Found at i:2069 original size:52 final size:54

Alignment explanation


    Indices: 1931--2058  Score: 163
    Period size: 55  Copynumber: 2.4  Consensus size: 54

       1921 CCTAAAAAAA

                                          *                        
       1931 TTTACTTCACCTAAACCCCCCAAAATTTTTGTCATTTTACTTTTCTCCCAAAACT
          1 TTTACTTC-CCTAAACCCCCCAAAATTTTTTTCATTTTACTTTTCTCCCAAAACT

                       *             *            *                
       1986 TTTACTTTCCCGAAACCCCCCAAAACTTTTTTC-TTTTGC-TTTC-CCCAAAACT
          1 TTTAC-TTCCCTAAACCCCCCAAAATTTTTTTCATTTTACTTTTCTCCCAAAACT

                                 
       2038 TTTACTTCCTCCTAAACCCCC
          1 TTTACTT-C-CCTAAACCCCC

       2059 AATTTTTTTT


Statistics
Matches: 65,  Mismatches: 5, Indels: 8
        0.83            0.06        0.10

Matches are distributed among these distances:
  51    2  0.03
  52   15  0.23
  53   14  0.22
  54    5  0.08
  55   26  0.40
  56    3  0.05

ACGTcount: A:0.24, C:0.35, G:0.02, T:0.38


Consensus pattern (54 bp):   
TTTACTTCCCTAAACCCCCCAAAATTTTTTTCATTTTACTTTTCTCCCAAAACT
Done.