genome.fa.s9133.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01009133.1 Kokia drynarioides strain JFW-HI SEQ_123837, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  226359

Tables:   1   

This is table  1  of  1  ( 91 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2042--2356	158	2.0	158	85	0	432	28	22	25	24	1.99
2516--2541	2	13.0	2	100	0	52	50	0	0	50	1.00
16287--16645	141	2.6	144	77	7	362	37	9	18	34	1.83
28464--28528	11	6.0	11	78	3	60	24	6	3	66	1.29
28476--28531	22	2.5	22	82	0	67	23	7	5	64	1.40
31847--31889	6	6.8	6	84	10	50	60	0	6	32	1.23
32332--32380	18	2.8	18	84	6	57	61	0	0	38	0.96
32332--32363	16	1.9	17	93	6	57	56	0	0	43	0.99
32694--32745	8	6.4	8	97	2	95	15	13	46	25	1.82
39132--39183	27	1.9	27	84	0	68	38	3	9	48	1.54
39725--39821	48	2.0	48	93	0	167	20	7	36	36	1.80
44438--44471	6	5.7	6	89	0	50	20	17	61	0	1.34
47862--47898	16	2.3	16	90	0	56	40	0	0	59	0.97
49739--49832	6	15.8	6	70	10	59	42	0	39	18	1.50
49764--49806	17	2.4	18	88	3	61	39	0	41	18	1.51
51175--51235	19	3.2	19	76	17	72	8	3	14	73	1.19
51415--51466	25	2.2	23	86	10	77	26	0	5	67	1.13
51416--51466	24	2.1	24	92	3	84	25	0	5	68	1.12
52818--52900	39	2.0	41	88	6	125	39	1	4	54	1.30
53708--53769	31	2.0	31	87	6	90	35	12	9	41	1.76
55773--55815	20	2.3	19	84	15	54	58	0	2	39	1.11
72433--72462	14	2.1	14	93	0	51	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73799--73882	28	2.8	31	75	12	84	61	2	2	33	1.21
78612--78662	22	2.5	21	76	17	54	66	1	0	31	1.03
82005--82029	10	2.5	10	100	0	50	60	0	0	40	0.97
85894--85920	2	13.5	2	100	0	54	51	0	0	48	1.00
86115--86171	23	2.4	24	82	2	71	29	5	1	63	1.27
86131--86186	21	2.7	21	77	2	60	30	5	0	64	1.16
86133--86208	21	3.6	21	74	10	57	28	6	1	63	1.28
86194--86272	28	2.7	30	76	18	78	34	6	0	59	1.23
86155--86259	38	2.7	39	71	19	96	29	7	0	61	1.29
86156--86302	19	7.7	18	70	14	73	30	6	1	61	1.28
86271--86343	19	3.7	19	78	8	58	35	1	1	61	1.13
86289--86328	20	2.0	21	90	5	64	35	0	0	65	0.93
89333--89378	20	2.3	20	82	14	51	52	0	13	34	1.40
90252--90428	51	3.5	51	89	1	275	28	12	25	32	1.93
97519--97698	51	3.5	51	90	2	265	28	13	24	32	1.94
99143--99180	5	7.6	5	93	0	67	78	0	2	18	0.86
100628--100669	22	1.9	22	90	0	66	26	19	30	23	1.98
109164--109192	2	14.5	2	100	0	58	51	0	0	48	1.00
109214--109258	20	2.2	20	88	0	63	60	4	0	35	1.17
109547--109585	15	2.4	16	91	8	62	38	0	0	61	0.96
109593--109654	22	2.8	21	73	9	61	41	1	1	54	1.19
114337--114366	7	4.3	7	100	0	60	43	13	13	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115343--115431	29	3.2	28	72	19	80	62	20	0	16	1.32
115338--115407	18	4.0	17	74	18	63	65	20	0	14	1.26
115442--115530	43	2.0	44	89	6	137	53	20	2	23	1.56
126857--126982	61	2.1	61	86	5	175	27	13	11	47	1.77
128852--128969	62	1.9	62	82	6	150	30	11	10	48	1.72
129431--129466	18	1.9	19	88	5	56	63	5	8	22	1.43
130225--130252	6	4.7	6	100	0	56	32	0	0	67	0.91
132524--132953	214	2.0	214	97	0	806	32	23	16	27	1.96
135384--135413	15	1.9	16	93	6	53	53	0	3	43	1.17
135864--135902	14	2.7	15	84	8	53	71	2	5	20	1.17
136564--136673	54	2.0	54	100	0	220	50	3	20	25	1.64
137950--137975	1	26.0	1	100	0	52	100	0	0	0	0.00
142019--142080	21	2.9	21	97	2	115	62	4	0	32	1.16
145868--145947	42	1.9	42	84	0	106	23	20	22	33	1.97
153178--153701	174	3.0	174	92	0	870	34	17	21	25	1.95
155598--155637	18	2.1	20	86	9	57	50	0	7	42	1.30
157859--157907	20	2.3	23	72	20	59	26	12	10	51	1.71
157868--157906	20	2.0	20	94	0	69	28	10	12	48	1.74
158263--158311	16	3.1	16	80	17	57	59	0	0	40	0.98
159521--159594	32	2.4	31	82	10	89	35	12	9	43	1.74
159704--159765	29	2.1	29	87	0	88	40	6	9	43	1.63
160094--160152	19	3.2	18	74	9	57	40	0	5	54	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163641--163763	40	3.1	40	80	2	131	31	17	17	33	1.93
164668--164814	77	1.9	77	94	0	258	46	23	10	18	1.80
165152--165278	53	2.4	53	83	0	164	20	15	36	27	1.93
166687--166771	31	2.8	30	83	13	104	61	1	8	29	1.33
169502--169528	13	2.1	13	100	0	54	14	29	22	33	1.94
174359--174405	23	2.0	23	84	12	60	65	6	0	27	1.16
174573--174606	17	2.0	17	94	0	59	50	0	0	50	1.00
174813--174857	20	2.1	22	84	12	58	33	0	2	64	1.06
176796--176821	3	8.7	3	100	0	52	30	0	0	69	0.89
188684--188712	2	14.5	2	100	0	58	51	48	0	0	1.00
190149--190204	22	2.5	22	80	11	62	78	1	12	7	1.02
190149--190219	21	3.3	22	76	7	65	80	2	9	7	1.00
191126--191150	11	2.3	11	100	0	50	48	0	20	32	1.50
193669--193703	18	1.9	18	88	0	52	77	0	0	22	0.78
196374--196450	30	2.5	30	81	10	86	24	12	12	49	1.77
204627--204659	10	3.3	10	84	16	50	72	0	0	27	0.85
204626--204661	11	3.5	11	85	14	58	72	0	0	27	0.85
215040--215070	16	1.9	16	93	0	53	38	0	22	38	1.54
217210--217331	60	2.0	60	87	0	172	38	7	15	38	1.76
218265--218298	15	2.2	16	89	5	52	64	0	2	32	1.08
222959--223024	28	2.3	28	86	2	96	31	12	7	48	1.68
225405--225447	9	4.9	9	80	13	54	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225623--225648	2	13.0	2	100	0	52	50	0	0	50	1.00
226176--226220	21	2.2	20	80	7	56	73	0	24	2	0.95
226188--226247	17	3.6	17	68	8	52	71	0	28	0	0.86

Tables:   1

The End!